Tachysurus fulvidraco (yellow catfish): 113658459
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Entry
113658459 CDS
T08119
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113658459 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113658459 (parn)
Enzymes [BR:
tfd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
113658459 (parn)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113658459 (parn)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
R3H
Motif
Other DBs
NCBI-GeneID:
113658459
NCBI-ProteinID:
XP_047659028
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All DBs
Position
18:19936224..19942748
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AA seq
396 aa
AA seq
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MEVTRQSFKDTLRVIYSAVDDADFLAIDGEFSGLSDGPAVSMLTNGMDTPEERYSKLRKH
SMDFLLFQFGLCTFRYDQSRAQYFTKAFNFYIFPKPFSRASPDIKFICQSSSIEFLASQG
FDFNKVFRDGIPYLNQEEESQLREQYEERRSQNNGVGTPSYISPTSCKGPMNIPEEHKDF
INRVIEKVEALLNNSEKTVALEPCTGFQRKLIYQTLNWKFPKGLHIETVENDKKERFIQL
SKVDEDERRRIEQQKHEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFY
CPLPEELDDFKEVTMCVFPRLLDTKLMASTQPFKELITNTSLAELEKQLKEKPFKAPKVE
CSEGFQSYDTSSEQLHEAGYDAYITGLCFISMTLGH
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaacacgacagagttttaaagacaccctgcgtgttatttacagcgctgtggac
gacgcagatttcctggctattgatggagagttttcaggtctgagtgacgggccggccgtc
agcatgttgaccaacgggatggacacaccagaggagcgctacagcaagctcaggaagcac
tctatggactttctgctctttcagtttggcctctgcaccttcagatatgaccagtcacgt
gcccagtatttcacaaaagcttttaacttctacattttccccaaaccgttcagcagagca
tcacctgatattaaattcatctgccagagctccagtattgagttcctggccagtcagggg
ttcgacttcaacaaggtgttccgtgatgggattccctacctgaaccaggaggaggagtct
cagttaagggagcagtatgaggagaggaggagtcaaaacaacggggtggggactccatcc
tacatctcacccacttcctgtaagggaccgatgaacattcctgaggagcacaaagacttc
atcaacagagtcattgaaaaagtggaagctctcctgaacaactctgagaagacggtggcc
ttggagccgtgcactgggtttcagagaaagctcatctaccagaccctaaactggaagttt
cccaaaggacttcatattgaaactgtggagaatgacaaaaaggaacgttttattcagctc
agtaaggtggatgaagacgagaggaggaggattgagcagcagaaacatgagcgggagcag
gaggagctgaatgatgcagtgggtttttcccgagtcatacacgccatttctaaatctggt
aaactggtggttggtcacaacatgctgctggatgtcatgcacactatccaccagttctac
tgccccctgcccgaggagctggacgactttaaagaggtcaccatgtgtgtgtttcctcga
cttttggatacgaagctgatggcatctacacaacctttcaaggagctgattacaaacacg
tctctggcagagctggagaagcagctaaaggaaaagccatttaaagcacctaaagttgaa
tgttctgagggatttcagagttatgacacttcgtctgagcaactgcacgaagctggatat
gatgcttatatcactggactttgcttcatctccatgacactgggacactaa
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