Tachysurus fulvidraco (yellow catfish): 113658504
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Entry
113658504 CDS
T08119
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113658504 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tfd03041
]
113658504 (snrnp200)
Enzymes [BR:
tfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113658504 (snrnp200)
Spliceosome [BR:
tfd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
113658504 (snrnp200)
Complex C
U5 SnRNP specific factors
113658504 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
T2SSE
PhoH
SWI2_SNF2
DUF603
DrmE_N
Motif
Other DBs
NCBI-GeneID:
113658504
NCBI-ProteinID:
XP_027026830
LinkDB
All DBs
Position
14:complement(16335234..16397458)
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKSQRTK
PQMLEERRAKRRKRDEDRHDINKMKGFTLLSEGIDDMVGIVYKPKTKETRETYEILLSFI
QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIT
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDEGSDDSEGEEADVGCTLS
ANLGSAGDVMTNKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDRE
CENQLVLLLGFNTFDFIKVLRQHRRMILYCTMLASAQSDLEKERIMSKMEADQDLSQVLY
QLQETEKEDIIREERSRRERVRKSRVDNDLESMDIDHGQTMASRHLLDLEDLAFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFSEDETLVAIEKMPKYSQAAFEGFKTLN
RIQSKLFKTTMETDGNLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVDDFKIIYVA
PMRSLVQEMVGSFGKRLASYGITVSELTGDHQLCKEEINASQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDSKGEGILITSHGELQYYLSLLNQQLPIESQMLGKLPDMLN
AEIVLGNVQNAKDAVNWMGYTYLYVRMLRNPTLYGVSHDERNTDPLLELRRMDLVHTAAT
VLEKSNLTKYDKRTGSFQMTDLGRIASHFYITHDSVMTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFRKLPEEVIKK
IEKKSFPFERLYDLNHNEIGELIRMPKIGKTIHKYVHQFPKLDLAVHLQPITRSTLKVEL
TITPDFQWDEKIHGSSEAFWILVEDVDSEVILHHEYFLLKSKYAQDEHLVTFFVPVFEPL
PPQYFIRVASDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNAAFECLYQ
NMFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHSSEGRCVYITPM
DSLAEQVFVDWHQKFQVLLNKKVVILTGETSTDLKLLGKGDIIISTPDKWDILSRRWKQR
KNVQNVSLFLVDEIHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYYTIMKHSPSKPSLVF
VPSRRQTRLTAIDILTFCAADVVPQRFLHCSEKELVPFLEKLSDTALKETISNGVGYLHE
GLSMTERRIVEQLFNSGAIQVVVASRSLCWGTNISAHLVIVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPLQDDEGCCVIMCQGSKKDFFKKFLYEPLPVESHLDHRLHDHFNAEIVT
KTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLQDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIRH
HEDTLLHQLAQKVPHKLNGPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTTEHVKRCTEKGVESI
FDIMEMEDEDRITLLQLSDIQMADVARFCNRYPNIELSYEVVDKDDIKSGSPVVVQVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVVGVQ
NYTLYFMSDAYMGCDQEYKFSVDVKEADTDKDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttacagcgcgtagcttgcaatacgaatataaagcgaactcgaacttagtt
ttgcaagcggaccgctctctgatcgaccgcacacggcgagatgagcccactggagaggta
ttatctctggttgggaaattggagggaacaaaaatgggcgataagagtcagagaacaaag
ccacaaatgttggaggaaaggagagcaaagagaagaaagcgggatgaggacaggcatgac
attaacaaaatgaaagggttcactcttctgtctgagggcattgatgatatggtgggtatt
gtttataagcccaagaccaaagagaccagagaaacttatgaaattctactgagcttcatc
caggctgctcttggagatcagcctagagatatcttatgtggggctgctgatgaagtcttg
gctgtattaaagaatgacaagatgagagataaggaaaggcggcgagaggttgagcagctg
cttggccctgcagatgacacgcgttaccatgtccttgtcaacctgggcaaaaagatcacg
gactatggtggagacaaggaactacaaaatatggatgacaacatagatgaaacgtatggc
gtaaatgtacagtttgaatctgatgaggaggaaggtgatgaggatcaatttggagaagta
cgtgatgaaggctctgacgacagtgagggtgaggaagcggatgtgggctgtacactgtct
gcaaatctgggaagtgcaggagatgtgatgacaaataaaaagaaagaccttcatccaagg
gatatcgatgctttttggcttcagcgacagctcagtcgtttctatgacgatgctattgtg
tctcagaagaaagctgatgaagttctggagattctcaagactgccagtgatgatagagaa
tgtgaaaatcagttggtacttctgttgggttttaacacttttgacttcatcaaggtgtta
cgccagcacagacgcatgatcctgtactgcaccatgctggcaagtgctcaaagtgacttg
gagaaggagaggattatgagcaaaatggaagcagatcaggatttgtcccaagttctttac
cagttgcaagagactgaaaaagaagacataattcgtgaggaaagatcacgaagagaaaga
gtgagaaaatctcgtgttgacaatgatctggagtcaatggacattgatcatggccagacc
atggcatctcggcatctgctagatctagaggaccttgcctttacccagggcagtcacttt
atggctaacaagcgctgccagctgcctgatggttcattccgtaaacaaaggaaaggttat
gaggaggttcatgttcctgcacttaaacccaagcccttctctgaggatgagactcttgtg
gctattgagaagatgccaaagtactctcaagcagcgtttgaggggtttaaaactttgaac
cgcatccaaagcaagctgttcaagaccacgatggagactgatggaaatttgttggtgtgc
gctcccactggagctggaaaaactaatgttgcactgatggccatgctcagagaaattggc
aagcacatcaacatggatggcaccatcaacgtagatgacttcaaaataatttatgttgct
cctatgcgttcactggtacaggaaatggtgggcagttttggaaagcgtttggctagttat
ggtataacagtgtctgagctgactggagatcaccagctttgtaaggaggagatcaatgct
tcccagatcattgtgtgcacacctgagaagtgggatattatcacccggaagggaggggag
cgcacatacacccagctagtgcgcctcatcatcatcgatgagatacacttacttcacgat
gatcgtggaccagttctggagtctctgattgctcggactatccgaaatgtagaactgact
caggaagatgtgcgcctcattggtctcagtgccacactgccaaattatgaggatgtggct
acatgccttcgtgtagaccctgctaagggtcttttctactttgataacagttttcgacct
gtgccactagaacagacatatgtaggaatcacagagaagaaggcaatcaagcgctttcag
atcatgaatgagattgtctatgagaagataatggaacatgctggaaagaatcaggtcttg
gtatttgtccattcacggaaggagacggggaagactgcacgagcaatcagggacatgtgt
ctggagaaagacacattaggacttttccttcgagaaggttctgcctcaacagaggtccta
agaactgaggcagaacaatgcaagaatctggagctaaaggatctgttgccatatggattt
gccatccatcatgctggcatgactagagtggacagaacattggttgaggatctttttgct
gatagacatatacaggtactggtgtcaactgctacactggcctggggcgttaacttgcca
gcacacactgtcatcatcaaaggcacacaggtgtatagcccagagaaaggcaggtggaca
gagctaggagcgctagacattttgcagatgctggggcgtgcaggacgcccacagtatgac
tctaaaggagagggcattttgatcacatcccatggagaactgcagtattatctgtctctg
cttaaccagcagttgcctatagagagtcagatgttaggcaaactcccagacatgctcaat
gctgagattgtgctgggcaatgtccagaatgctaaggatgctgtgaactggatgggttat
acttatttgtatgtgcggatgctgcgtaacccaacactctatggggtttcccatgatgaa
cgcaacaccgatcccctgctggagttgcgtagaatggatcttgtgcacactgctgccact
gtactagagaagagcaacctgactaaatacgataagaggactggtagcttccagatgacg
gacctgggccgcattgccagtcacttttacatcacacatgattccgtaatgacctataat
cagctgcttaaacctacgctcagtgaaattgagctcttcagggtgttctccctctcctct
gaattcaggaacatcactgtgagagaggaggagaagcttgagctacagaaacttctggaa
agggtgccaattccagttaaggagagtattgaggagcctagtgctaagataaatgtgctg
cttcaggcctacatctcccaacttaagctggaaggctttgctctaatggccgacatggtc
tatgtcacccagagtgcaggtcggcttatgagggctatctttgagattgttttgagccga
ggttgggcacaactcactgacaagaccatgaacctttgcaagatgattgacaaaaggatg
tggcagtctatgtctcctctgcgacagttccgcaaacttcctgaagaagttatcaagaaa
attgagaaaaaaagctttccatttgaacgactgtatgacctcaaccacaatgaaattggc
gaattgattcgtatgcccaagattgggaaaaccatacataagtatgtgcatcagttccca
aaactggacttggcagtgcatcttcagcctatcactcggtccacacttaaagtggagctc
acaatcacaccagacttccaatgggatgaaaagatacatggatcatcagaggcattttgg
atcttggtggaagatgttgacagtgaagtgatcctacaccatgaatatttcctgctcaag
tcgaagtatgctcaggatgagcacctggtcaccttttttgttcctgtgtttgagccactg
cctccacagtacttcatcagagttgcctcagaccgttggctttcatgcgaaacccagcta
ccagtgtcatttcgccacctgatcttgccagagaagtatccacctccaacagagctgctt
gacctacaacctcttcctgtatctgccctcagaaatgctgcatttgaatgcctttaccaa
aacatgtttcctttcttcaatcctattcagacccaagtgtttaatgctgtatacaacagt
gatgataatgtgtttgttggcgcccccactgggagtgggaagaccatctgtgcagagttt
gccattctcaggatgctgctgcacagctcagaaggccgttgcgtctacatcacaccaatg
gattctctggctgaacaagtgtttgtggattggcaccagaagtttcaagttcttctgaat
aaaaaggtagtaatactcactggagagaccagcactgacctcaagctactggggaaaggt
gacattatcatcagcaccccagataagtgggatattttgtcccgccgatggaaacagagg
aagaatgtccagaatgtcagtctttttcttgtggatgagattcatcttattggaggagag
aacgggcctgtactagaagttatctgctccaggatgaggtacatctcttctcagattgag
cgtcccattcgcattgtggcactaagctcatctctgtccaatgcaaaagatgtggcacac
tggttgggttgtagcaccacagcaaccttcaacttccacccaaatgtcaggcctgtgcca
ctggagcttcacattcagggtttcaacgtcagtcacacacaaacccggctactgtctatg
gctaaacctgtatactacaccatcatgaagcattctccatctaaaccatctttagtgttt
gttccttctcggagacagactcgccttactgccattgacatattaactttctgtgctgct
gatgtggttccacaaaggttcctacactgctctgagaaggaattggtgccattcctggag
aaactgtctgatactgcattgaaagaaaccatctctaatggtgtgggttatcttcacgaa
ggactctcaatgactgaacgcaggatagtcgaacagctctttaactctggtgctattcaa
gttgtggtggcttctcgttctctttgctggggaacaaacatctctgcccatttggtcatc
gtcatggacacacaatattacaatgggaaaattcatgcttacgtggattacccaatctat
gatgtgctgcaaatggtggggaaggccaatcgtccccttcaggatgatgagggctgctgt
gtcattatgtgccagggctctaaaaaggacttctttaagaagtttctttatgagcctttg
cctgttgaatctcatttggaccaccgtcttcatgaccacttcaacgctgagatagtcacc
aagactgttgaaaacaagcaggatgctgtggactacctcacttggacttttctttaccgt
cgaatgacccagaaccccaattactacaatcttcagggtatgtctcatcggcatctgtca
gaccacttgtctgaattggtggagaacacactgcaggatctggagcagtccaagtgcatc
agcattgaggatgagatggatgttgcacctcttaatctcggcatgattgctgcatactac
tacattaactataccaccattgagttattcagcatgtctctgaatgccaagactaaaatc
cgtggtctgattgagatcatctccaatgctgctgagtacaagaacataccaatcaggcac
cacgaagacaccctgcttcatcagctagcccagaaggtacctcacaaactgaacggcccc
aagtttaatgacccccatgtgaagacaaacctgttgttacaggcccatttgtcccgtatg
cagttgagtgctgagcttcagtctgacactgaagaaatactcagtaaggctgtacgtctc
atccaggcatgtgtagacgtgctctcgagcaatggctggctgagtccagcattggctgct
atggagctagcccaaatggtgacacaagccatgtggtctaaggattcttatctaaaacag
ttgccacacttcacaacagagcacgtcaaacgctgtacagaaaagggtgtggagagcatc
tttgacatcatggagatggaggatgaggaccgcattactcttctgcagctgtcagatatt
cagatggctgatgtggcacgtttctgtaacagataccctaacattgagctctcctatgaa
gtggttgacaaagatgacatcaaaagtggcagtccagttgttgttcaggtgcagttagag
agagaggaagaggttacaggacctgtcattgctccactgtttccacagaaacgtgaagag
ggctggtgggttgtgattggagaccccaaatctaacagtcttatctcgatcaagagattg
actctgcaacaaaaagcaaaggtaaaactggattttgtggcccctgttgttggtgttcag
aactatacactgtatttcatgagtgatgcttacatgggttgtgaccaggagtacaagttc
agtgtggatgtaaaggaggcagacactgacaaagacagtgactcagactga
DBGET
integrated database retrieval system
