Tachysurus fulvidraco (yellow catfish): 113659060
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Entry
113659060 CDS
T08119
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
113659060 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tfd01009
]
113659060 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tfd04131
]
113659060 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
tfd03029
]
113659060 (rb1cc1)
Protein phosphatases and associated proteins [BR:
tfd01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
113659060 (rb1cc1)
Membrane trafficking [BR:
tfd04131
]
Autophagy
Autophagosome formation proteins
ULK complex
113659060 (rb1cc1)
Mitochondrial biogenesis [BR:
tfd03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
113659060 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
DUF3020
Motif
Other DBs
NCBI-GeneID:
113659060
NCBI-ProteinID:
XP_027027424
LinkDB
All DBs
Position
3:complement(30404177..30421386)
Genome browser
AA seq
1583 aa
AA seq
DB search
MKLYVFQVNNGSMLTFDTELAVQTVLDLKHAIQAKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFNVENEMEMKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTTSYQKLLSKFDMAYTNYQQ
DFEDIKLKLTKLGTAVLVMAKIPLLECLTRNSYRESLERSSSPHPRPGDGGDEQGAQTSS
QSAILVPTERQQDQKSPSSGDSSSPGRAGSGGTGGLQEVLEEEKDQEETEKTDGPSFNVT
LLDWINVQDRPNDVEAVVRKCFDSINRLDPRIIQPFLGECRDTITKLDNQNMKAIKGLED
RLYALDQMIASCKKLVNEQKELAQGFLANQMRAENLKDNSVLPDLCLSHANQLMIMLTNH
RKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQNGEKLQALLRLLTELLERVRVVE
ALSTVPQMYCLAVVEVVRRKMFVKHYREWASALVKDGKNLYEAEKAKRETFGKLFRKSFL
RNRLFRGLDSWPSSSFCTRKPRKFDFELPDISLTDLQYLKSCCPAEVQPFLRVPSLCDFE
PLKCHREALHQLVQAARSVDEMSQTITDLLSELQVSGSQSAHRPSSECRSETTPTSSRTP
PALSIQSPPTQPLSLPAPLEDLSPDSIDAHTFDFETIGHPNMDPVLHQGSLDLDSLAESP
ESDFMSAVNEFVIEGNVTSPNPISDPTSPEMMVESLYSSVINAIDSKRIQDTTMLERENS
RIRTLKLTIDRYRSAAEESQSNMRKVKDDLCHFQGLVLKEQRDFAFALKKMSAEIHGIID
TSRRCREEELSEGHQSELRKLKDDHEKHILRLTDELEGNHKIVRDVQRAMLELEGLVERK
EKELAQMEGERERLLQEVRGSHQQAVQELEWNLSERSKALQEALHSRDALAGQLDRLQVE
IEQKMRREMENAEKNRLQDLEARLKTEHQAQMEILQRNSQSALDALTVENQARLKELTEA
HLTERKEHEWCFKDYEARIGELADARCKLEVEIALKETEMDDLRVQYEEAKNQQEEALKA
EMESRTKNLQEQVEALTKQLQKKNEEHDQGLAELRALMRLEKDHCISELVERHDEESTLL
RQEFSALKQKSQDAEKDCEERLQEIQHQLEDQIKNLSKARDEDQTAFEDKERDLRAVIGD
LQAVNTLLSGQLEQERLEARRAVEEGKDTLLQKEEMEARLLGKIKLLEERQSADKGAAAG
ESEAGDVSLQQRLDEEKACLLGKLELLEKKKNEELQNLKTSLIAEQQTNFNTVLMREKLK
KEQIINELSEKLKKVTLQQEKDKSLIQTLSEDRATILQEKKHLEEELNRLRSAALISSAF
FVPNPISVAIETAGACGPVPTEGPVLPALDPERLGSVALLRDDDRVDSAVEASLMTVHDN
ASMLSEEKQRILMLERTLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVL
IILDERHDNYVLFTVGPTLYFLHSESLAALDLKPAAGATRRPWVLGKVMEKEYCQAKKAQ
NRFKVPLGTKFYRVKAVPWNKKV
NT seq
4752 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtacgtgttccaggtcaataacgggagcatgttgacctttgacaccgaacta
gcggtgcaaactgttctggacctcaaacatgcaatccaggcgaagtacaagatcgccact
cagcatcaggtgctggtggttaacggaggcgagtgtatggtggccgagaggagagtgtgt
agctacagtgcaggcacggatacgaaccctatcttcttgttcaacaaagagatgatcttg
tgcgaccgcgcgccaaccatccccaaaaccaccttcaacgtggagaacgagatggagatg
aaggtggaggaatcgctcatgatgccggccgtgttccacaccgtggcctcccggacgcag
ctcgccgtggaaatgtttgaagtcgccaagaagctgtgctccttctgcgaacgcctggtt
catgacgaacaccttcagcatcagggctgggcagccatcatggccaaccttgacgactgc
accacgtcctatcagaagctgctgtcgaaattcgacatggcctacactaattaccaacag
gattttgaagacatcaaactgaagctgacaaagctcggcacggccgtcttggtcatggct
aaaatccctctgctggagtgcctgacccgcaacagctacagagaaagcctggagagatcc
tcctccccgcatcccagacccggagacggtggcgatgaacaaggagcccaaacgtcctcc
cagtcagccatcttggtccctacagagcgccagcaggaccagaaatctccctcttcagga
gactcctcgtctccaggccgagcggggagcggcggcaccggcgggctgcaggaggtgctg
gaagaagaaaaggatcaggaggagacggaaaaaacggatggtccgtcgtttaacgtcacg
ctgctagactggatcaatgtacaggaccgacccaatgacgtcgaggccgtagttaggaag
tgcttcgactccatcaacagactcgacccgcggattattcagccgtttctcggcgagtgc
cgggacactattacgaaactggataatcaaaacatgaaagccataaaggggctggaagac
agattgtacgcactcgaccaaatgatcgccagctgcaaaaagctagtgaacgaacagaag
gagctcgctcagggatttttagccaatcagatgagggctgaaaacctgaaggacaactcg
gtgctgcccgacctgtgtctgagtcacgccaatcagctgatgatcatgctgaccaaccac
aggaagctgctggacattaagcagaagtgcacgactgccaaacaggaactggctaacaac
ctgcaagtccgtctcaaatggtgctgctacgtgatgctgcatgcggatcagaatggcgag
aagctacaagcgctgctgcgcctcctgaccgagctgctggagcgcgtgcgcgtggtggag
gccctcagtaccgtcccacagatgtactgcctggccgtggtggaggtggtgcgccggaaa
atgttcgttaaacactacagagagtgggccagtgccctggtgaaagatgggaaaaacctc
tacgaggcagagaaggccaaaagggagacttttggcaagctgttcagaaagtcgttcctc
agaaatcgcttgttccgtggacttgactcgtggcctagctcatcattttgcacaagaaag
cctcgcaagtttgactttgagcttccggatatttccctgactgacctgcagtatctgaag
agctgctgtcctgcagaagtgcagccttttctcagggttccatcactatgtgattttgag
ccgttaaagtgccacagagaagctcttcatcagttagtacaagcagctcggagtgtagac
gagatgtctcaaaccatcacagacttactgagcgaactgcaggtttctggtagccagagt
gcacacagacccagctcggaatgcagatcagagaccacgcccacctcctctagaaccccg
cccgcgctcagtatacagtctccgcccactcagccgctctcccttccagctccgttagaa
gacctgtcccctgacagtatagacgctcatacgtttgactttgagaccataggacatcct
aatatggaccctgtgctccatcagggttctctggacctggactctttagccgagagcccg
gagtccgacttcatgtcggcagtgaacgagttcgtcatcgaagggaacgtgacctcgccc
aatcccatcagcgacccaacaagtcccgagatgatggtcgagtccctttactcctcggtc
atcaacgctatagacagcaaaaggatccaggatacgaccatgcttgagagagagaactcc
agaatcaggaccctcaagctgaccatagaccggtaccgttcggctgccgaggagtcgcag
agcaacatgaggaaagttaaggatgacctctgtcatttccagggactcgttctaaaagag
cagcgggactttgcttttgccttgaagaagatgagcgcagaaatccatgggataatcgac
accagtagacgttgtcgggaagaggaactctccgaggggcaccagagcgagctccgaaag
ctgaaggatgatcacgaaaagcacatcctccggcttaccgacgagctggaagggaaccac
aagatcgtccgggacgtccagagggccatgctcgagctcgaagggcttgtggagaggaaa
gagaaagagctggctcagatggaaggcgagagggagcgcctgctgcaggaggtacgcggc
agccaccagcaggccgtccaggagttggagtggaacctttccgagcgcagcaaggcactc
caagaggccctgcattccagagacgctcttgccggccagctcgatcgcctgcaggtcgag
atcgagcagaagatgcgcagagaaatggagaacgcagagaagaaccgtctccaagacttg
gaagctcggttgaaaacggagcaccaagcgcaaatggagatccttcaacgcaacagccag
agtgctcttgatgccttaaccgttgagaaccaagccagactgaaggaactcacagaagca
cacttgacggagcgcaaggagcacgagtggtgctttaaggactacgaggcacgcatcggc
gagctggccgacgcccgatgcaaactcgaagtggaaatagcacttaaagagactgagatg
gacgacctgcgcgtgcaatacgaggaagccaagaaccagcaggaggaggcactcaaggct
gagatggagtcacggacaaagaatctccaagagcaagtcgaggcactgacgaagcagcta
cagaagaagaacgaggagcacgatcaaggcctcgccgagctgcgtgctctaatgcgcctc
gagaaggaccactgcatctccgagctggtggagcggcacgacgaggagagcacgctgctg
cgacaggagttctctgcactcaagcagaagtctcaggacgccgagaaggactgcgaggaa
cgtctgcaggagatccagcaccagctggaggaccagatcaaaaacttatccaaggctcga
gacgaggatcagacggctttcgaggataaagagcgagacttgcgagccgtcatcggcgac
ctgcaggccgtaaacaccctcctgtcagggcagctggagcaggagcgtctggaggcccgg
agagcagtggaggaagggaaagacaccttactgcagaaagaggagatggaagcgaggctg
ttgggaaaaatcaaactacttgaggaaagacaatccgctgacaaaggagccgcggctgga
gaaagcgaagccggggacgtctcgttgcagcagaggctggacgaagaaaaggcgtgtctc
ctgggcaagctggagctgctggagaagaagaagaatgaggagctgcagaacctgaagacc
tcactgatcgctgagcagcagactaatttcaacactgtactgatgcgggagaaattaaag
aaggagcagatcatcaatgagctgagtgagaagctgaagaaggtgacgctacagcaggag
aaggataagagcctgatccagactctctccgaggaccgcgctaccatcctgcaggagaag
aaacacctagaggaggagctgaaccgcctccggagcgccgccctcatctcctccgctttc
tttgtgcccaatcccatttctgttgccatagagacggccggagcgtgcggccccgttccc
accgaaggccccgttctgcctgctctggatccggagaggttggggtctgtggcgctgctc
cgagacgacgacagagtggactctgctgtcgaagcgagcttgatgaccgtccatgataac
gcctcgatgctgtcagaggagaaacagcggatactgatgttggaaagaaccctgcacatg
aaagaagaggagaacaagaggctcagccaaagactgatgtcccagagcatgtcgtccgtg
tcctccaggcattcggagaaaatcgccattcgagattttcaggtcggtgacttggtcctc
ataatcctcgacgagcggcacgataattatgtgctgtttacggtcggccccactctctac
ttcctgcactcggagtctctcgctgcactggacctcaagcctgcagctggagctacgcgg
cgaccctgggtcctggggaaggtcatggagaaggaatactgtcaggcaaaaaaggcccaa
aatcgcttcaaagttcctttgggcaccaaattctaccgagttaaagccgtgccatggaat
aagaaggtgtaa
DBGET
integrated database retrieval system
