Tachysurus fulvidraco (yellow catfish): 113659077
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Entry
113659077 CDS
T08119
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113659077 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113659077 (cnot3a)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113659077 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113659077 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
113659077
NCBI-ProteinID:
XP_027027440
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All DBs
Position
3:30797597..30805610
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AA seq
859 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKSWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEETEQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKKLIERHRYHI
RMLETILRMLDNDSVQVDAIHKIKDDVDYYIDSSQDPDFKENEFLYDDLDLEEIPMLATS
PQGHNEEEMSTPTSTTSSSPIPPSPATAPTEIPEEEKKRGRSTDSEVSQSPVKISNPLSS
FSSSSSSSSGFSSSSTSSLVSMAAVVGGTASVSGGNTLLGTFSSAVQQHPHGKLSSSSSS
SSSSSSSSSSSSVTSSSTSSPPSHPNLPSSTTPLALPTSNSQLLTSAGLNVSKASTAVTS
SSMPGMMPSNMAAIISSSMPTPYAQAAAGSSLSGPTGNNSSTVSALSGANSNTNSTPTAN
GPVQMGSSGGILGLGPAQTTHQGAAQLPISPVGTVPGGGASMGPGNGGSAASSGGILGNV
APARPPSVVKQNGGTNSLAYSAVVADSSSDSSLSSASLSQSSQPSSTNSSANQTLDNGPT
LLSSITLPPSSQSPSFSDSTTGGGSLLNGPHSYTPSAEPIKTPEPLSSLKAMAERAALGS
GLDGEIPPLHLTERDLFSGSSAAPGPPVPPQPAVTEVNLPPTLGACPLGPCPLTKEQLYQ
QIMQESAWGHMPLPSDSERIRQYVMRTPCPLLPFHHHTPPHHCDSIDFYQRLSTETLFFI
FYYMEGTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQ
RKKEGFTFEYRYLEDRDLQ
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggccgataagagaaaactccaaggtgaaatagaccggtgtttaaaaaaagtcgcagag
ggggtggaacagtttgaggacatttggcaaaagcttcacaatgcagccaacgccaatcag
aaggagaaatacgaagccgacctcaagaaggagattaaaaagctccagagactccgagac
cagatcaaatcatgggttgcgtccaatgagatcaaagacaaacggcagctagtggagaac
cgcaaactcatcgagacgcaaatggagcgcttcaaagtggtggagcgggagacaaagacg
aaggcgtactctaaagaaggcctgggtttggctcagaaagtggatccagctcagaaggag
aaggaggaaacagaacagtggctcacgaacactatagacactctgaacatgcaggtggat
cagtttgagagcgaggtggagtctctgtccgttcagacgaggaagaaaaaaggagacaag
gagaagcaggatcgcatcgaggagctgaagaagctaattgagagacaccggtatcacatc
cgaatgctggagaccattttaaggatgttggacaacgactcggtgcaggtggacgcgatc
cataagataaaggacgacgtggactattacatcgactcctcgcaggatcccgactttaag
gagaacgagttcctgtacgacgacctcgacctcgaagagatcccgatgctggcgacgtct
ccgcagggacacaacgaagaagagatgagcactcccacctccacgacgtcgtcctctccc
atccctccatctccagccacggctcccaccgagatccctgaagaggagaagaaacgaggc
agatctactgacagcgaagtgagccagtcaccggtgaagatcagcaatcccctgtcttct
ttctcgtcctcttcctcctcctcctccggcttttcctcctcttccacctcatccctcgtt
tccatggcagctgtcgttggggggaccgcgtcggtttccgggggcaacactctcctgggt
acttttagcagcgcagttcagcagcatccgcatggcaagctatcctcgtcgtcctcctcc
tcgtcctcgtcgtcatcgtcgtcttcttcctcctccgtgacgtccagcagcacatccagc
ccgccaagccaccccaatttgccctcatccaccacgccgttggccctccctacgtctaac
tctcaactgttgacatcagcagggcttaacgtgagcaaagcaagcacagctgtgacgagc
agcagtatgcctggcatgatgcccagcaatatggctgccattatttcgagctcgatgccc
actccgtatgcccaggcagcagctggcagcagcctgagtggacccacgggaaataacagc
agcactgtttcagctttgagtggagcgaattctaacactaattctacgcccaccgctaac
ggaccggtgcagatgggctccagcggggggattttagggctcggaccagcgcagacaacc
caccagggagcagcacagttacccattagcccggtcggaacggtgccagggggcggagcc
agcatgggccctggaaacgggggcagtgcagcttcgtcagggggcatcctgggtaacgtg
gcacctgctcgaccacccagtgtagtgaaacaaaacggaggaacaaactctctagcgtac
agcgccgtggtggccgacagcagctcagactcctccctcagcagcgccagcctatcacag
agcagccagccctcgtccaccaactcctcagcaaatcaaactctggacaacgggccgacc
ctgctgagctccatcactctgcctccctcctctcagtctccctcgttctcagacagcacc
accggcggtgggagtttactgaacggcccgcactcgtacacacctagtgcagagccaata
aagactcctgagccgctgagctccctgaaggcgatggctgagcgagcagctctaggatca
ggactggatggagaaatcccacctcttcatctgacagaacgagatttgttctctgggtcc
tcggccgctcccggccccccggttcccccccagccggccgtaacagaggtcaaccttcca
cctacgctgggggcgtgtcctctaggcccctgccccctcactaaagagcaactgtatcag
cagatcatgcaggaatcggcctggggccacatgcctctcccgtcagactcagaaaggatc
aggcaatacgtgatgaggactccgtgccctcttttgcccttccatcatcacactcctcct
catcactgcgactccatcgacttctaccagagactctccacagagaccctctttttcatc
ttctactacatggagggtacgaaggctcagtatctgtcagctaaagccctgaagaagcag
tcttggagattccacactaaatacatgatgtggttccagagacacgaggaacccaaaacc
atcaccgacgagttcgaacagggaacctacatttactttgactatgaaaaatggggccag
aggaagaaggagggcttcacattcgagtacagatacctggaggacagagacctgcagtga
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