Tachysurus fulvidraco (yellow catfish): 113659602
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Entry
113659602 CDS
T08119
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04512
ECM-receptor interaction
tfd04514
Cell adhesion molecule (CAM) interaction
tfd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113659602
04514 Cell adhesion molecule (CAM) interaction
113659602
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113659602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tfd04131
]
113659602
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
tfd04090
]
113659602
00535 Proteoglycans [BR:
tfd00535
]
113659602
Membrane trafficking [BR:
tfd04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
113659602
CD molecules [BR:
tfd04090
]
Proteins
113659602
Proteoglycans [BR:
tfd00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
113659602
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
Serglycin
Romo1
Motif
Other DBs
NCBI-GeneID:
113659602
NCBI-ProteinID:
XP_027028309
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All DBs
Position
12:17056651..17067975
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AA seq
353 aa
AA seq
DB search
MRLQLVLCLCLWIPVAQSFGVHAPEDQDGSGDDEFSGSGSGSGDFEIWFSEPEVTYQANP
NTTKTPWITDAPVNLPEHSVTPFVNPDTETETSDHVSEALLPHTTQIMETQPSLFISKSF
GSVEDQKGETTAISTVAPQPETTVPPAVKVPVVPTQEDEYTTAAKEEEDTTESSVTEQEI
EETTVVESVSVTTAPPDMETTPLLLSTASPSDLADTEASGDSVEVTTVQGIGEDFSETNI
IPEDREHVGKPRLNDHDFEFENEIQTVLNSDVSGSGSDFARGSASDNDSLLERKEVLAGV
IAGGVVGLAFAIMLVALMVYRMKKKDEGSYSLDEHKHPNGGYQKPQKQEEFLA
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgaggctccagcttgttttgtgcctctgcttgtggatacctgttgctcagtcgtttgga
gttcatgcaccagaagatcaagatggatcaggagatgatgagttctctgggtcagggtca
ggatcaggagattttgaaatctggttctctgaacctgaagtgacataccaagcaaatcct
aacactacaaagacaccctggatcacagatgcccctgttaatcttccagaacattcagtt
accccgtttgtcaatcctgacactgagactgaaacatctgaccatgtctctgaagctctt
ttgccacacaccacccaaatcatggagactcaaccatctctgttcatcagcaaatcattt
ggctcagtggaagatcagaaaggtgagaccacagcaatcagcactgtggcaccacagcca
gagaccactgtacctccggctgtgaaagtaccagtggtacctacgcaagaggacgaatac
acgactgcagccaaagaggaggaggacaccacagaatcctccgtcaccgaacaagagata
gaagaaaccacagttgttgaatctgtgtctgtgacgactgcaccacctgatatggagacc
acaccactccttctgagcacagcatcacctagtgatttagctgatactgaagcttcgggt
gattctgttgaagtcactactgttcaaggcattggtgaagattttagtgaaactaacata
attccagaggaccgtgaacatgtggggaaaccaagattgaatgatcatgactttgaattc
gaaaatgaaatccagacggtattaaactcagacgtttctgggtctgggtctgattttgct
cgaggcagtgcttccgacaacgatagcttactggaaaggaaagaggtccttgcaggtgtc
attgcgggaggtgtggtgggcttggcttttgccatcatgcttgttgctctcatggtgtac
cgcatgaagaagaaggatgagggaagttattcactagacgagcacaaacatcccaatgga
ggctaccagaaaccacagaaacaggaagagtttctggcataa
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integrated database retrieval system