KEGG   Tachysurus fulvidraco (yellow catfish): 113659602
Entry
113659602         CDS       T08119                                 
Name
(RefSeq) syndecan-1
  KO
K06257  syndecan 1
Organism
tfd  Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04512  ECM-receptor interaction
tfd04514  Cell adhesion molecule (CAM) interaction
tfd04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tfd00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    113659602
   04514 Cell adhesion molecule (CAM) interaction
    113659602
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    113659602
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:tfd04131]
    113659602
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:tfd04090]
    113659602
   00535 Proteoglycans [BR:tfd00535]
    113659602
Membrane trafficking [BR:tfd04131]
 Exocytosis
  Calcium ion-dependent exocytosis
   Acrosomal exocytosis proteins
    113659602
CD molecules [BR:tfd04090]
 Proteins
  113659602
Proteoglycans [BR:tfd00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   113659602
SSDB
Motif
Pfam: Syndecan Serglycin Romo1
Other DBs
NCBI-GeneID: 113659602
NCBI-ProteinID: XP_027028309
LinkDB
Position
12:17056651..17067975
AA seq 353 aa
MRLQLVLCLCLWIPVAQSFGVHAPEDQDGSGDDEFSGSGSGSGDFEIWFSEPEVTYQANP
NTTKTPWITDAPVNLPEHSVTPFVNPDTETETSDHVSEALLPHTTQIMETQPSLFISKSF
GSVEDQKGETTAISTVAPQPETTVPPAVKVPVVPTQEDEYTTAAKEEEDTTESSVTEQEI
EETTVVESVSVTTAPPDMETTPLLLSTASPSDLADTEASGDSVEVTTVQGIGEDFSETNI
IPEDREHVGKPRLNDHDFEFENEIQTVLNSDVSGSGSDFARGSASDNDSLLERKEVLAGV
IAGGVVGLAFAIMLVALMVYRMKKKDEGSYSLDEHKHPNGGYQKPQKQEEFLA
NT seq 1062 nt   +upstreamnt  +downstreamnt
atgaggctccagcttgttttgtgcctctgcttgtggatacctgttgctcagtcgtttgga
gttcatgcaccagaagatcaagatggatcaggagatgatgagttctctgggtcagggtca
ggatcaggagattttgaaatctggttctctgaacctgaagtgacataccaagcaaatcct
aacactacaaagacaccctggatcacagatgcccctgttaatcttccagaacattcagtt
accccgtttgtcaatcctgacactgagactgaaacatctgaccatgtctctgaagctctt
ttgccacacaccacccaaatcatggagactcaaccatctctgttcatcagcaaatcattt
ggctcagtggaagatcagaaaggtgagaccacagcaatcagcactgtggcaccacagcca
gagaccactgtacctccggctgtgaaagtaccagtggtacctacgcaagaggacgaatac
acgactgcagccaaagaggaggaggacaccacagaatcctccgtcaccgaacaagagata
gaagaaaccacagttgttgaatctgtgtctgtgacgactgcaccacctgatatggagacc
acaccactccttctgagcacagcatcacctagtgatttagctgatactgaagcttcgggt
gattctgttgaagtcactactgttcaaggcattggtgaagattttagtgaaactaacata
attccagaggaccgtgaacatgtggggaaaccaagattgaatgatcatgactttgaattc
gaaaatgaaatccagacggtattaaactcagacgtttctgggtctgggtctgattttgct
cgaggcagtgcttccgacaacgatagcttactggaaaggaaagaggtccttgcaggtgtc
attgcgggaggtgtggtgggcttggcttttgccatcatgcttgttgctctcatggtgtac
cgcatgaagaagaaggatgagggaagttattcactagacgagcacaaacatcccaatgga
ggctaccagaaaccacagaaacaggaagagtttctggcataa

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