Tachysurus fulvidraco (yellow catfish): 113660733
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Entry
113660733 CDS
T08119
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03030
DNA replication
tfd03410
Base excision repair
tfd03420
Nucleotide excision repair
tfd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113660733 (rfc1)
03410 Base excision repair
113660733 (rfc1)
03420 Nucleotide excision repair
113660733 (rfc1)
03430 Mismatch repair
113660733 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tfd03032
]
113660733 (rfc1)
03400 DNA repair and recombination proteins [BR:
tfd03400
]
113660733 (rfc1)
DNA replication proteins [BR:
tfd03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
113660733 (rfc1)
DNA repair and recombination proteins [BR:
tfd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
113660733 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
AAA_7
AAA_30
AAA_33
AAA_16
Rad17
AAA_17
RNA_helicase
RuvB_N
AAA_14
BRCT_2
AAA_18
nSTAND3
AAA_19
NTPase_1
SKI
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
113660733
NCBI-ProteinID:
XP_027030292
LinkDB
All DBs
Position
7:complement(19085825..19100844)
Genome browser
AA seq
1124 aa
AA seq
DB search
MDIRRFFAPKPGQDKGRGSSSTDEEPKNKKKPASKTTSSTLELKRSAKRKKRVIADSDEE
EEEKKGKKSPKEKPSASGKKDPVTYVSDSDSDEAFLSLKKPSKHKENTCSKDKKDSGPKE
TKAKQVKTPPVQSPSPKEKEATKKNVRSPTPPKSSTAPKHTPTSVLDYFGNSAARRSDTK
LVAGTSTKRKAPTGDPEEPRDDASIAKQLQMDEDMELEKQIHEDEEFARTLAMFDEAPQP
KKARLDSHSPSKISTRAKTKSSPKQPSPKKSPVKASSKLAMMKKRADEEEQRQKSEEEKK
SKRFISPKKEPIAPASSETAATPKTGVSAGRPKRISTPKSEGGSTKTSPTKPETSPEDAE
KKRVNSTAYRNYLNREGPRALGSKEIPQGEENCLEGCVFVLTGVLESMERDDAKSLIERY
GGKVTGNVSRKTNYLVLGRDSGASKTEKAQSFGTKILNEDELLDLIRTKPGKKSKYEIAA
EAESKASKSRTPDPKGKRTPKGRKVTPRKCSASKSSPSPSSSSTPGTSRTSRQGSSSEVR
KTLEFGAGKSTDDGGGSSLLWVDKYRPRTLKSLIGQQGEHSCANKLLRWLKDWHKRHSGD
AKPAAARFGRFGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNASCTRSKN
SLKEVIAESLNNTSIKNFYTGASQTVSNKHVLIMDEVDGMAGNEDRGGIQEMIGLIKSTK
IPIICMCNDRNHTKIRSLANYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPALNEVIL
ASNQDIRQVLHNLSMWSATDKVMTYDQAKADANKARKDMKMGPFDVCRKVFVTGEETAHM
TLIDKSDLFFHDYSLAPLFVQENYIHVRPAAAGGDLKNHLVLLSKTADSICDGDLVDRQI
RSRQVWSLLPTQAVYASVLPGELMRGYMSQFPTFPSWLGKFSSRGKHSRIVQELSSHMSL
KTLSSKEAVNLDYLPYLRSALLEPLRCRGAEGATQSVTLMDDYNIIKEDFDSIMEISTWG
GQPDPYSKLDSKVKAAFTRAYNKESHLTPYSLQALKKGRRGTVDTEQALDPDNDLQTQEE
EEEDTLTVDAMIKQKKAKVTKEVKKEKAEDSGKGKGKGKGKGRK
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgcagattcttcgcaccgaagcctggccaagacaaaggaagaggaagcagc
agcactgatgaagagcccaagaataaaaagaaacccgcttccaagacaacaagctccacg
ttggaactaaaacgatcagcaaaaaggaaaaagagggtcatcgctgattcagatgaggag
gaagaggagaagaaaggaaagaaaagtcctaaagagaagccttcagcatctgggaagaaa
gatccagtgacttacgtgtcggattcagactccgatgaagcctttctgtctctgaaaaag
ccctcgaagcacaaagagaacacctgcagcaaagacaagaaggactcaggtccgaaggag
acgaaagccaagcaggttaaaacgccacccgttcaatccccgagcccgaaggagaaggaa
gcgacgaagaagaacgtgcgcagcccgactccacccaagtcgtcgaccgcacccaaacac
acccccacatccgtgctcgattactttggcaactcggcagccaggagatctgacacgaag
ctagtggccggtacgagcaccaagaggaaagcgcccacaggagatcccgaggaaccacgc
gacgatgcctccatcgcgaaacagctacagatggacgaggacatggagttggagaaacag
atccatgaagatgaggagtttgctcgaaccctggccatgtttgatgaagcccctcagcct
aaaaaggctcgtttggactctcattcgccctccaagatcagcacacgggcaaaaaccaag
tcttcgcccaagcagccttcaccgaagaagagtcctgtcaaagccagttccaaactagca
atgatgaagaaaagagccgacgaagaggagcaacggcagaagagcgaggaggagaagaaa
agcaaacgtttcatctccccgaagaaagagccaatcgcaccagcttcatccgagacagcg
gccacgcctaaaacaggcgtttcagcaggacgcccaaaacgcatttccacacccaagagt
gaaggaggaagtaccaagacctctcctacaaaaccagagaccagcccagaagacgcggag
aagaagcgtgtgaattctacagcgtatcgaaactacctgaaccgagaaggacctcgtgca
ctgggctctaaagagatcccacagggagaagagaactgtctggaaggctgcgtgtttgtg
ttaactggtgttttggagtccatggagagggacgatgctaagtctctaatagaacgctac
ggtgggaaagtcacaggaaacgtcagcaggaaaaccaactacctggtgctgggacgagac
agcggagcctccaagaccgagaaggcacagagttttggcaccaagatcctaaacgaggac
gagttactggatttgatccgaaccaaaccgggcaaaaagtccaaatacgagattgctgca
gaagctgagagtaaagcctctaaatcgaggaccccagaccctaaaggcaaacgcactcct
aagggccgcaaagtcacgccccgcaaatgctccgcaagcaagagcagtccctcaccgtct
tcctcatcgacccctggaacctccagaacttcccgccaaggctcttcgtccgaggtcagg
aagactctggaatttggtgcaggaaaaagcacggacgatggcggcggcagcagcttgctg
tgggtggataagtaccgcccccgcactctgaagagtctgatagggcagcagggggagcat
agctgtgccaataaactcctgagatggctgaaagactggcataaaagacacagcggcgat
gcaaaaccagcagctgctcgctttgggaggtttggaggtaaggatgacggttccgggttc
aaagccgctttgctctctggacctcctggtgtagggaagaccaccactgctgctctcgtg
tgtgaggagttaggttacagttacgtggagatgaacgctagctgcacccgcagcaagaac
agtctgaaagaagtcatcgccgagtctctcaataacacaagcatcaagaatttctacaca
ggtgcatctcagacagtcagcaataaacacgttctcatcatggacgaggtggatggcatg
gcaggaaatgaggacagaggaggaatacaggaaatgatcggtctgatcaaaagtactaag
atccccattatctgcatgtgcaacgaccggaaccacacgaagatccgctcgctcgccaac
tactgcttcgacctgcgtttccagcggcctcgtgtggaacagatcaagggagccatgatg
tccatcgcttttaaagaaggtttaaagatcccaccgccggcactcaatgaagtcattctg
gcgtccaatcaggacattcgacaggtgctgcataatttgagtatgtggtcagccacagac
aaggtcatgacctacgaccaggcgaaagctgatgctaacaaggccaggaaggacatgaaa
atgggaccgtttgacgtatgcaggaaagtgtttgttacaggcgaagagaccgcccacatg
accctgattgacaagtcagaccttttcttccacgattactccctggcgccgctgttcgtc
caagagaactacatacatgtccggccggccgccgcagggggggacctaaagaaccactta
gtgctgctgagcaaaacggcagacagcatctgcgacggagatttagtggaccgacagatc
cgctctcgtcaggtctggtctctgctgcccacgcaggcagtctatgccagtgtgctgccg
ggggaactgatgcgggggtatatgagtcagttccctacgtttcccagctggttgggcaag
ttttcatccaggggaaaacacagtcgcatcgtacaggagctgtcatcacacatgagtctg
aagacactgagcagtaaggaggcagtaaatctagactacctgccctacctgcgttctgct
ctgctggagcctctgcgttgtcgcggggcagaaggagccactcagagcgtgacgctcatg
gacgactacaacatcatcaaagaggattttgacagcatcatggagatcagtacgtggggt
ggacaaccagatccctactccaagcttgactccaaggtgaaagctgcattcacacgggct
tataacaaggagtcccacttaacgccgtactcactgcaggcactaaagaaaggtcgcaga
ggcacagtggacactgaacaggctttagaccctgataatgacctccagacacaggaagag
gaagaggaggacacacttactgttgatgccatgatcaagcaaaagaaggcaaaagtgaca
aaagaggtcaaaaaggagaaagcagaggattctggaaagggtaaaggaaaaggcaaagga
aaaggcaggaagtga
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