Tachysurus fulvidraco (yellow catfish): 113661114
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Entry
113661114 CDS
T08119
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113661114 (col17a1b)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
113661114
NCBI-ProteinID:
XP_027030901
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All DBs
Position
4:complement(18531792..18553977)
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AA seq
1505 aa
AA seq
DB search
MDFLTRQTEDSRGSPGDRVITETISTTRLTSLPPKGFSGSSSKSMSNSSWGSSFEKNILN
HNSSTNSYLPSSSVSVNAGGSGLDYALLLGDDYTGSSRSGGGRGGSTGIESVSGKESGLK
SRSSSSGLRRTQGSSSSINHSPILLERKTTLSHSGGYDGSSSANSSPELTRKDYGSSRGR
SQNRESEIRVRLQSASPSTKWTELEDVKKLVKSGRSSSVSPTRSTASSTLPVPRKAKVET
KIIKQGSQTASGQYDTTILDSALPSYTWTSSTLPSNASGNSAFAYQSSTNNMSPGSSLLN
TTSPSSLSVYGFQNNLATPSGTLLTSNTVNTHSGYGVQKNISQSIGSSGVVSTGVSTSTD
TTTHSVKDDMRRKYIILEKENVPSKKETEVLVLSKDSGKQFSSTSYGKGGSVSDISLKKE
AVASSYPETSPVKLSSSSYYGSSSAPTKDKATYAEIYKEKNGGKGGGGCFDCGPSCCSWW
KWLLGLLLSLLLLLGLLFGLIALAEDMRKMKERVDALQNLVQGRFKAQTNRLTGQNIHNQ
RSAYMDMENDLATSDNTVNLGAATSSDSASLRTIQNLLQTELQSETFRASLASTLKGERG
LAGPKGETGAQGPKGDSGFPGIPGSPGAIGHPGPEGPKGQKGSAGEHGGEGPPGIRGRDG
LPGQRGEPGPAGAGEKGERGSSGEPGARGFPGSPGPPGPKGSAGLNGLMGAAGEPGSQGF
RGEAGPAGPKGDRGPQGQQGIKGDHGEKGDPGVPGFPGAPGKPGTNGEKGSRGSTGTSGA
DGEKGQRGDQGPIGMPGIRGPAGPPGDAGSQGPPGLQGPPGIAGLPGQPGVKGENGEPGR
VINAAGYSSVAIPGPPGPAGPPGPAGPPGLSGPVGPAGIPGQAGPKGEKGDQGEAGITVE
RTETSVRGERTYGSLDATQVIQGPPGPPGPPGPPGAPGYGTPGPRGEKGVKGEQGSFVPN
SGTFFAGPPGPPGPSGPKGDTGPQGPRGYQGDPGQPGLPGRPGGSEIRNSGVQGPPGPPG
PQGLPGQQGPKGDSGIPGAPGIPGTSRGSGSVGVSGQPGPPGPPGPPGSPGHSISTTDYR
RYIIDFMQSDSMRQHLSSIQGPPGPPGASVSVEDVASRVIAYIQRSGLTGSPGPPGPAGS
VSVSDIIALLQRDDVRRYVTGPPGPPGPSGSINLGNFDTQEVANYVLRLMSDRGLTSRSG
LPGPPGPPGPPGQPGSTYSDITALIERSGLRAGLQGPPGPPGRQGLPGPVGPPGAPGSSS
SGYRFEDIQAYIQNSGLRGAQGPPGPPGPQGPAGDSRALDRASQRANIRAELQEYLSSDA
MRRYSSILPGPPGPPGPRGEKGDRGESGYSAGGGYYYSPDRNGVRLAETDYSNVAQKVTD
YIRSQGVLQEMNDNYWQSHFHGIQGPPGPAGPPGQPGYSRVFSTYGNITADLMDFFRTHG
TIPGPPGRQGHKGEIGYPGPKGEKGEMGRQGTPGVQGPRGPEGPRGQKGEKGEIQIGRRR
RSLGV
NT seq
4518 nt
NT seq
+upstream
nt +downstream
nt
atggatttcttaacaaggcaaacagaagattcacgaggaagtccaggagacagagttata
actgaaaccatatcaacaaccagactcacatcattaccaccaaagggcttcagtggatct
agcagtaagagtatgagtaacagctcttggggaagcagctttgagaagaatattctaaac
cacaatagtagcaccaattcctacttgccttcctcctcagttagtgtaaatgctggggga
tcagggttagactatgccctgttactgggagatgactacactgggagcagcaggagtgga
ggaggacgcggaggcagtacaggaattgaaagtgtttctggaaaagagtctgggttgaag
agcaggtccagctcatcgggcttgagaaggacacaaggttcatcctcctctattaaccac
tctcccattttattggagagaaaaactaccctcagtcactcagggggttatgatggaagt
tcaagcgccaattcatcaccagagctcacgaggaaggactatggctcatctagaggaaga
tcccaaaacagagagagtgagatcagggtcagattacagagtgcatctccatcaaccaaa
tggacagagctggaagatgtgaagaaattagtgaagagtggacgatcgtcaagtgtcagc
cccactcgctccacagcctcgtccactctgcctgttccacgcaaagctaaagtcgagacc
aaaatcatcaaacaaggcagtcaaactgcctcagggcagtatgacaccactattctggac
tcagcacttccatcgtatacatggaccagctccacactgccctctaatgcttctggcaac
tctgcgtttgcttatcaaagtagcaccaataacatgtcaccaggatcttctcttttaaac
accacttcgccatcctctctatcagtgtacggtttccagaataatcttgccacaccatct
ggtacacttctcacatcgaatacagttaacacacattcaggatacggtgtgcagaaaaac
atttctcagagtattggtagctctggcgttgttagtacaggagtttctacttctacagac
acaactacacactccgttaaagatgacatgcgacgaaaatatattatacttgagaaggag
aatgttccttcaaaaaaagagacagaagtgcttgttctgtcaaaggacagcgggaagcag
ttctccagcacatcgtatggaaaaggagggtctgtttcggacatctcactgaagaaggag
gctgtagcaagcagctaccctgagacatctcctgtcaaattaagttcaagctcctactat
ggatcttcatcagcccctactaaagataaggctacatatgcagagatctataaggagaag
aatggtggaaaaggaggaggcggttgttttgactgtggtccgagctgctgctcctggtgg
aagtggctgcttggactgctgcttagtcttctgctgctcctcggccttctttttggactt
atcgctctcgctgaggacatgagaaagatgaaagagcgtgtagatgctcttcagaacctg
gttcaaggcaggttcaaggctcaaactaatcgcctgactggacagaacattcacaatcaa
aggtcagcatatatggacatggaaaacgatctggctacttctgataacacagtgaacttg
ggagctgctacttcctcagactcggcatccctgagaacaatacagaaccttctacaaacc
gagctgcagtctgagactttccgagctagccttgcttccacactcaaaggagaaagagga
ctggcagggcctaaaggtgaaactggagctcaaggacccaaaggggatagcggtttccca
ggtataccaggttctccaggggcaataggacacccaggacctgaaggaccaaaaggacaa
aagggaagtgcaggcgagcatggtggagaggggccaccaggaatcaggggccgagatgga
ttaccagggcagcgaggagagccaggacctgcaggtgctggagaaaagggtgaaagaggc
tcttctggagaaccaggcgctcgtggctttccaggttcacctggtccaccgggtccaaaa
ggttcagcaggtcttaatggtttgatgggtgctgcaggtgaacctggttcacaaggtttc
agaggagaagcaggacctgcaggacctaaaggggacagaggacctcaaggacaacaagga
attaagggtgatcacggtgaaaagggagatcctggtgtgccaggtttcccaggggctcca
ggaaaaccaggaactaatggtgagaaaggatccagaggatcgacagggacttcaggtgca
gatggtgaaaagggccaaagaggtgaccaaggtccaattgggatgccaggaatcagaggc
ccagctggaccacctggtgatgctggatctcaaggaccaccaggacttcaaggacctcca
ggcattgcaggacttcctggacagcctggagttaaaggtgaaaatggtgaacctggcaga
gtaatcaatgcagctggctacagctctgtggcaattcctggacctccagggccagctgga
ccacctggacctgctggacctccagggctgtcaggccctgttggtcctgctggaattcct
ggacaagcaggtcctaaaggtgaaaagggtgatcaaggagaggctgggatcacagtggaa
agaacagagacctcggttagaggagaaagaacctatggttcattagatgctactcaagtt
attcagggaccacctggaccacctggtccccctggacctcctggagctccaggatatggc
acacctggcccgagaggagagaaaggagtgaagggagagcaagggagttttgtgcccaac
tcaggaacattttttgctggaccaccaggaccacctggaccttcaggtcctaaaggagac
acaggacctcaaggacctagaggatatcaaggtgatcccgggcagcctggcctacctgga
aggccagggggatcagaaatcagaaactctggagttcaaggaccacctgggccacctgga
cctcaagggctgccaggtcaacagggccctaaaggggacagtggcattcccggtgcccca
gggatcccaggaacatcaagaggatccggttctgtcggggtttcagggcagcctgggccc
ccagggcctccaggaccacctggatctcctggacactccatatctacaacagattatcga
cgttacattattgacttcatgcagagtgacagcatgaggcagcatttatctagtatccag
ggcccacctggtcctcctggggcctcagtgtctgttgaggatgtggcatctcgggttatt
gcatacattcagcgctctggattgactggatcccctggtcctccgggtcctgctggctct
gtatctgttagtgatatcattgcattattacaaagagatgatgttaggcggtatgtaact
ggccctccaggaccacctggcccttcaggaagtataaatctgggcaactttgacacacag
gaagtggcaaactacgttctgagattaatgagtgatcgagggttgacaagtagatctgga
cttcctggtcctcctggaccacctggtccacctggccagccaggctccacctacagtgac
atcactgctttgattgagaggtcaggtcttagagcaggtcttcaaggtccccctggtcct
ccaggaagacaaggcctacctggtccagttggtccccctggagcccccggctcttcaagt
tcaggatacagatttgaagacatccaggcctacatacaaaattctggcttacggggtgcc
cagggtccacctggccccccgggacctcaagggcccgcgggagactctagggcacttgac
agagccagtcagagagcaaacattcgtgctgagcttcaggagtatctcagtagtgatgct
atgcggcgttatagctcaattcttcctggacctcctggtcctccaggaccccgtggtgaa
aaaggggaccgtggtgaatctgggtacagtgcaggcggtggctactactattctcctgac
cgtaatggagtcaggttggctgaaacagactactccaatgttgctcagaaagtcactgac
tacattcgaagccagggtgtactgcaggaaatgaatgacaattattggcaatctcatttc
catggaattcaaggtcctcctggtcctgctggtccacctggtcagcctggatacagccgt
gttttttctacctatggaaatatcactgcagatctcatggatttcttcagaacacacggt
actattcccgggccacctggtaggcaaggacataaaggagaaataggataccctgggccc
aaaggagaaaaaggggagatgggaagacaaggaacacctggtgttcagggaccaagaggt
ccagaggggccaaggggtcaaaagggtgagaaaggtgaaatccagattggtcgccgcaga
aggagtcttggtgtgtaa
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