Tachysurus fulvidraco (yellow catfish): 113661220
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Entry
113661220 CDS
T08119
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
113661220 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfd03021
]
113661220 (supt5h)
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113661220 (supt5h)
Transcription machinery [BR:
tfd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
113661220 (supt5h)
RNA polymerase I system
113661220 (supt5h)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
113661220 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
113661220
NCBI-ProteinID:
XP_027031027
LinkDB
All DBs
Position
11:complement(9595314..9608436)
Genome browser
AA seq
1084 aa
AA seq
DB search
MSDSEDSDFSDNQSERSSEAEEVEENEEDEGQGSVAGSDKAEEEGEDLEEDEEEYDEEEE
EDDDRPRKKPRHGGFILDEADVDDEYEDEDLWEEGAEDILEKVNEEAEVSNLDPVTLDED
HSGSRRLQNLWRDSREEALGEYYMRKYAKSSGGEHFYGGSEDLSDDITQQQLLPGVKDPN
LWTVKCKIGEERATAIALMRKFIAYQCTDTPLQIKSVVAPEHVKGYIYIEAYKQTHVKAA
IEGVGNLRMGYWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEP
SQNTISLKMIPRIDLDRIKAKMSMKDWFAKRKKFKRPAQRLFDAEKIRSLGGEVSHDGDF
MIFEGNRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTETTGKEREH
NLQAGDNVEVCEGELINLQGKILSVDGSKITIMPKHEDLKDPLEFPAHELRKYFRMGDHV
KVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGE
LVQLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKD
IVKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFT
VGGFAPMSPRISSPMHPGGGGQMQRGGGGGGMGRGRGRRDNDLIGQTVRISQGPYKGYIG
VVKDATESTARVELHSTCQTISVDRQRLTSVGAKRHGGMTSTHGRTPMYGSQTPMYGSGS
RTPMYGSQTPIHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRQDEDYEFSYDD
EPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTDQYSPYAAPSPQGSY
QPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGG
YNPHTPGSNIDQTSSDWVTTDIQVRVKDTFLDGGVINQTGVIRSVTGGMCSVYLQETEKV
VSISSEHLEPVTPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMELDEQLKILNLRFLG
KLEV
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacagtgaggatagcgacttttcagacaaccagagcgagaggagcagcgaggct
gaggaggtcgaggagaatgaagaggatgaagggcagggaagtgttgctggtagtgacaaa
gctgaagaagagggggaggacttggaggaagatgaggaggagtatgacgaagaggaggaa
gaggacgatgaccgtcctagaaagaagcctcgccacggaggcttcatcttagacgaagct
gacgttgacgatgagtatgaagatgaagatctgtgggaggaaggagccgaggacattttg
gaaaaagttaacgaggaggctgaagtttccaaccttgatcctgtaactctggatgaggat
cattccggttcccgcagactgcagaatctctggagagattccagagaggaagctttggga
gaatattatatgaggaaatatgccaagtcttcaggaggagaacatttctatggaggatca
gaggatctgtctgatgacattactcagcaacagctgctacctggtgttaaagatccaaat
ttgtggactgtcaaatgtaagatcggggaggagagagcaactgccattgccctgatgaga
aaattcattgcctaccagtgcactgacacaccacttcagattaaatcagtagtggctcct
gagcatgtgaaaggatatatctatatagaggcatataagcagactcatgtgaaagctgcc
attgaaggagtcggaaacctgcgaatgggctactggaaccagcaaatggtgcccattaag
gaaatgacggatgttcttaaagtggtgaaagaagtaacaaacctcaaacctaaatcctgg
gtccgccttaaaagaggcttgtacaaagatgatattgcacaggttgactatgtggaacca
agccaaaatacaatatcactgaaaatgattcctcgaattgatttggatcgaatcaaagca
aagatgagcatgaaagactggtttgcaaagagaaaaaagtttaaaaggccagcgcagaga
ctgtttgatgctgagaagatcaggtcacttggaggggaagttagccacgatggtgatttt
atgatatttgaaggcaaccgatatagtcgcaaaggcttcctgtttaaaagctttgccatg
tctgctgtgatcacagacggtgttaaaccaactctttctgaactggaaaagtttgaggac
cagcctgagggcattgacctagaagtggtgacagaaacaacaggtaaagagcgggagcac
aacctccaggctggggacaatgtggaggtgtgcgagggtgagctgatcaatcttcagggg
aaaattctcagtgttgatggcagcaagataacaatcatgcccaagcatgaggacctgaag
gaccctctagagtttccagcgcatgagttgaggaagtatttccgtatgggagaccatgtg
aaagtcattgcgggccgtttcgaaggcgacactggtcttattgttcgtgttgaagaaaac
tttgtaattctcttctctgatctcacaatgcatgagcttaaagtcttgccccgagactta
cagctgtgttcagagactgcatctggggtggatgcaggaggacaacacgaatggggggag
ttggtacagctggatccacaaaccgtgggtgtcattgtccggctggagagagagacgttt
caggtacttaacatgcatggtaaggtgctcacggtaaggcaccaggcggtgaatagacgg
aaggacaaccgctttgctgttgccctggattctgagcaaaacaacatccatgtgaaggac
atcgtcaaagtcatagatggaccacattctggcagagagggagaaatccgccatctcttc
cgaggctttgccttccttcactgtaagaagcttgttgaaaatggaggcatgtttgtctgt
aagacacgccatcttgtgctggctgggggttcaaagcctagagatgtgaccaatttcact
gttgggggttttgctcccatgagtcctcgaattagcagtccaatgcatccaggaggaggg
ggtcaaatgcagaggggaggcggtggcggaggaatggggcgtggccgtggaagacgagac
aatgatctgattggacagacagtcaggatatcccaaggaccatacaaaggttacattggg
gtggtcaaagatgccacagaatcaacagcaagagtagagctgcactcaacctgtcagact
atttctgtggaccgccagcgtctgaccagcgttggtgcaaagagacacggtggaatgaca
tccactcatggtcggactccaatgtatggctcccagacaccaatgtacggttcaggctct
cgtacgccgatgtatggcagccagacacccatccacgacggaagccgaacacctcattac
ggctcccagacaccgctgcatgatggtagccggacacctgggcagagtggagcttgggac
cccaacaatccaaacacaccatcaaggcaagatgaggattatgagttcagctatgatgac
gagccctccccgtctcctcagggttatgggggcacgcctaatcctcagacccctggctat
ccagaagtgccctctccacaagtcaatccccaatacaatccccaaacccctggaactcca
gcaatgtacaacacagaccagtactctccatatgcagcaccgtctccacagggctcttac
cagcctagccctagtccgcagagttatcaccaggtggccccaagtccagtgggttaccaa
aacacccactcaccagccagctaccacccaacaccatcacccatggcataccaggcaagt
ccaagccccagtcctgtaggctatagccccatgactcctggggcaccgtccccaggtggc
tacaaccctcacacccctggctcaaacatcgaccagacctccagtgattgggtcactaca
gacatccaggtgcgtgtcaaggacacatttctggatggaggcgtcatcaaccagactggt
gtcattcgcagtgtgacgggtggcatgtgctcagtatatctgcaggagacagagaaggtt
gtcagcatttcgagtgaacatctggagcctgtgactccaaccaaaaataacaaggtgaag
gtgattttgggagaagacagagaggccactggtgtcctgctcagtattgacggagaggac
ggcatcgtccgaatggaactggacgagcagctcaaaattctcaacctccgcttcctcgga
aaactagaagtgtga
DBGET
integrated database retrieval system
