Tachysurus fulvidraco (yellow catfish): 113661303
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Entry
113661303 CDS
T08119
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113661303 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113661303 (mtrex)
03041 Spliceosome [BR:
tfd03041
]
113661303 (mtrex)
03009 Ribosome biogenesis [BR:
tfd03009
]
113661303 (mtrex)
03016 Transfer RNA biogenesis [BR:
tfd03016
]
113661303 (mtrex)
Enzymes [BR:
tfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113661303 (mtrex)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113661303 (mtrex)
Spliceosome [BR:
tfd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113661303 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
113661303 (mtrex)
Ribosome biogenesis [BR:
tfd03009
]
Eukaryotic type
Pre-60S particles
Helicases
113661303 (mtrex)
Transfer RNA biogenesis [BR:
tfd03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113661303 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
113661303
NCBI-ProteinID:
XP_027031157
LinkDB
All DBs
Position
20:17841308..17868331
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDDLFSVFDEEPTTSSKKTSSKTESRIGKKIGTHDRDKTESLSGDKPESLKTKRE
PENDGSDEVLCGKKARLEASEELKSLGDLMPKVKVEQVETVEGCTHEVALPADQEYTQLK
PRVGKAAKDYPFILDPFQREAILCMDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVI
FTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREV
AWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHTQPCHV
VYTDYRPTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAGDSGASGGGGKWD
PKGRRGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALF
ATETFAMGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVD
EKMSPAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYKAVPG
VVEKMQKLEEMYNSIEIPNEDSVVTYYKIRQQLAKLAKDIEEYVHKPKYCLPFLQPGRLV
KVKKDDLDFGWGIVVNFSKKANVKASTGDLDPLYVVEVLLHCSKESVKNAATEAAKPAAQ
GEKGEMQVVPVMLNLLTAISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGLPLLDPI
DDMGIKDSGLKKVIQKVEAFEHRMYTHPLHTDPNLGAAYTLCEKKAVVAGDIKVAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEVKGRVACEISSADELLLTEMVFNGLFNDL
TAEQATALLSCFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKISAEAKLDVDEDAYLN
QFRPHLMDVVYTWANGASFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFALGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgatttattcagcgtttttgacgaggaaccgacgacttct
agtaagaagacgagctcaaagaccgaatctcggatcggaaaaaaaattggcacacatgac
agagataagaccgaatccctgtctggagataagccagaatccctgaagacgaaacgagag
cccgagaacgacggcagtgatgaggttttgtgtggtaaaaaggccagactggaggcatca
gaggagctcaaaagtcttggagacttgatgcctaaagtcaaagtggagcaggtggagaca
gtggagggctgcacacacgaggtggcgctgcctgcagatcaggaatacacacaactgaaa
ccgcgagtaggaaaagcagccaaggattacccgttcattcttgacccttttcagcgtgag
gccattctgtgcatggacaacaaccaatctgtcctcgtctccgctcacacctcagctggg
aaaacagtgtgtgcagagtatgccatcgctctggctctgcgggagaaacagcgagtgatc
ttcaccagccccatcaaagctctgagtaatcagaaatacagagagatgtacgaggagttt
caggatgtgggactgatgactggagacgtgaccattaaccccacggcctcctgcctcgtc
atgaccactgagattttaaggagcatgctgtaccgggggtcagaggtcatgcgtgaagtg
gcctgggtcatatttgacgagatccattacatgagggactcggagcgtggtgtggtctgg
gaggagaccatcatccttcttcctgataacgtccattacgtcttcctgtcagccaccatc
cccaacgctcggcagttcgccgagtggatctgtcacctacacacacagccctgccacgtg
gtgtacacagactacagacccactccactgcagcactacatctttccagcaggtggcgac
ggccttcacttggtcgtggacgagaacggggagttcagggaggataacttcaacacagcc
atgcaggttctccgggatgctggagactctggagcaagtggaggaggaggaaaatgggac
cctaaaggaagacgaggagggaccaagggtccatccaacgtgtttaagatagtaaaaatg
atcatggagagaaatttccagcccgtcatcatcttcagcttcagtaagaaggaatgtgag
gcgtacgctctacaggtgtccaaactcgacttcaatacagatgaagagaagaagctggtg
gaggaggtgttcagcaacgccatcgactgtctgtcagatgaggataaaaagctgccacag
gtggagcatgttctgcctctgttgaagagaggaatcgggatacaccacggtggactgctc
cccatcctgaaagaaaccattgagattctgttctctgagggactactgaaggccttgttt
gcgacggagacgtttgctatgggcatcaacatgcctgctcgcactgtgctcttcaccagc
gctcgcaagttcgacggcaaggacttccgctggatcacttcgggagagtacatccagatg
tcgggccgagctgggaggagagggatggacgagagaggaatcgtcatctttatggtggat
gagaagatgagtccagctgtggggaagcagctcttaaagggttctgctgatcctctgaac
agtgccttccacctcacctataacatggtcctgaacttgctgcgtgtggaggagattaac
cccgagtacatgctggagaagtccttctaccagttccagcactacaaagccgtccctggt
gtagtggagaagatgcagaagctggaggagatgtacaacagcatcgagatccccaacgag
gacagcgtggtcacttactataaaatccgccagcagttagccaagctggccaaagacata
gaagaatatgtgcataaacccaaatactgcctgccttttctacagcctggccgactggtc
aaggtgaaaaaggacgatttggattttggctggggcatcgtcgttaacttctccaagaaa
gcgaatgtcaaggccagtactggtgatctggatcctctgtatgtagtggaggttttatta
cactgcagtaaggaaagtgtgaaaaatgcagcaacggaagcagcgaaacctgcagcacag
ggagagaaaggagagatgcaggtggtgccagtcatgctgaatctcctcactgctatcagc
tctgtgcgactctacatccccaaagacctgcggccctacgacaaccgacagagcatgctt
aaatccatccaggaggtacagaaacgtttccctgatggtcttcctctgttagaccccatc
gacgatatgggcattaaagactccggactgaagaaagtcatacagaaggtggaggccttc
gaacacaggatgtacacacaccctctccacactgaccccaacctcggggctgcctacact
ctgtgtgagaagaaagcagtggttgccggtgatatcaaggtggcaaagcgggagctgaag
aaagctcgcacggtgctgcagatggatgagctgaagtgtcggaagcgcgtgctgcgccgc
ctcgggttcgccacatcctctgacgtcatcgaggtgaagggccgagtcgcctgtgagatc
agcagtgcggacgagctgctcctgaccgagatggtgtttaacggcctctttaacgacctg
actgctgaacaggccacagctttactgagctgcttcgtcttccaggaaaatgctaatgag
atgcctaaacttacagagcagttagctggcccactccgacagatgcaggaatgtgccaag
cgcatcgctaaaatctcagccgaggcaaagctggacgtggacgaggatgcctacctgaac
cagttccgccctcacctcatggacgtagtgtacacgtgggccaacggagcctccttctcc
cagatctgcaaaatgacggacgttttcgaaggcagcattattcgctgcatgaggcgcctg
gaggagcttctgcggcagatgtgccaagcggccaaggccatcgggaacactgagctggag
aacaagttcgctctcggcatcacgaagatcaagcgtgacatcgtgtttgctgccagtctt
tacctgtga
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integrated database retrieval system
