Tachysurus fulvidraco (yellow catfish): 113661410
Help
Entry
113661410 CDS
T08119
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04510
Focal adhesion
tfd04512
ECM-receptor interaction
tfd04518
Integrin signaling
tfd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113661410 (col1a2)
04518 Integrin signaling
113661410 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113661410 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113661410 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tfd00536
]
113661410 (col1a2)
Glycosaminoglycan binding proteins [BR:
tfd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113661410 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
113661410
NCBI-ProteinID:
XP_027031401
LinkDB
All DBs
Position
24:complement(8686220..8703295)
Genome browser
AA seq
1356 aa
AA seq
DB search
MLSFVDTRILLLLAVTSYLASCQSAYLKGPRGDKGPRGDRGPKGPDGKPGKHGLPGPPGP
PGPPGLSGNFAAQYDGSKGPDPGPGPIGLMGPRGPSGPPGTPGPQGPQGHAGEPGEPGQA
GPGGPRGPPGPPGKSGEDGNNGRPGQPGDRGTPGSQGARGFPGTPGLPGMKGHRGYNGLD
GRKGEPGEMGTKGETGAHGSNGTPGQRGARGLPGERGRPGPPGPAGARGADGNTGPSGPA
GPLGAAGPPGFPGGPGPKGEMGPAGPSGPSGPQGQRGEPGTNGVSGPVGPPGNPGANGLN
GAKGAAGTPGVAGTPGFPGPRGGPGPQGPAGPSGPRGLSGDPGPVGVKGESGAKGEPGNI
GAQGPTGAAGDEGKRGSTGEQGSAGPVGLRGARGAAGTRGLPGLAGRGGSMGMPGARGAA
GAPGARGPPGDAGRAGEAGLVGARGLPGSPGSPGPQGKEGPAGPSGQDGRSGPPGPTGPR
GQPGNIGFPGPKGPSGEPGKPGEKGLAGAPGLRGPPGSDGNNGPAGPVGLAGGPGEKGEA
GPAGAPGFQGLPGPAGPVGETGKPGDRGIPGDQGVAGPAGGKGERGNPGPAGASGAQGPT
GPRGPSGTPGPDGNKGEPGSAGLAGAQGPQGSVGMPGERGGAGTPGVKGEKGEPGYRGPE
GNAGRDGSRGAPGPIGPPGPAGTNGDKGEAGSAGPAGPAGARGSPGERGEAGPAGPPGFA
GPPGADGQPGAKGEKGPAGGKGDVGPSGVAGPAGNPGPAGPSGPSGPPGARGETGPTGLT
GFPGAAGRVGPPGPAGIAGPPGPTGHAGKDGPRGSRGDVGPAGPQGENGLIGPPGPPGEK
GSSGESGAKGPSGTPGPSGLIGPQGITGLPGSRGERGTPGPVGAVGEPGRVGPPGAPGPR
GPGGNIGLPGMTGPQGESGREGSPGNDGAPGRPGLAGVKGDRGEPGSPGPLGIAGAPGPL
GSSGPAGRPGNRGEAGPSGSVGPAGPAGARGAPGPSGPRGEKGVAGEKGERGMKGLRGHP
GLQGMNGVSGPSGDSGPAGPAGPAGSRGPAGPTGPSGKDGRPGTAGPVGPAGHRGPPGQS
GPVGPPGSPGLPGPPGAAGGGYDISGGYDEYRADQAALRAKDYEVDATIKSLNSQIDNLL
SPEGSKKNPARTCRDIRLSHPDWSSGFYWIDPNQGCTMDAIKAFCDFTTGQTCIYAQPES
IARKNWYRSTQEKKHVWFGETINGGTEFGYNDETLSPQSMATQLAFMRLLANQAVQNITY
HCKNSIAYMDGENGNLKKAALLQGSNDVELRAEGNSRFTYSVLEDGCTKHTGQWSKTVIE
YRTNKPSRLPILDIAPLDIGGADQEFGLDIGPVCFK
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacccggattctgttgctgcttgcagtgacatcgtaccttgcg
tcatgccaatcggcttatctgaagggcccaaggggagataaaggacctagaggtgatagg
ggtcctaaagggcctgatggcaaacctggcaaacatggacttcctgggccccctggccct
cccggcccccctggtcttagtggaaactttgctgctcagtacgatggctctaaaggacct
gatcctggccctggacctattggtttgatgggacctcggggccctagcggaccacccggt
acccctggacctcagggaccccaaggacatgctggtgagcctggagagcctggacaggct
ggaccaggtggacctcgtggaccccctggacctcctggcaagtctggtgaagatggtaac
aatggcagacctggacagcctggagacagaggtacacctggctcccagggagctcgtggt
ttcccaggaactcctggacttccaggcatgaagggacacagaggctacaatggccttgat
ggacgaaaaggagagccaggtgaaatgggaactaagggtgagactggtgctcatggctca
aatggaacccctggacaaagaggtgcacgtggcctgcctggtgagagaggtcgtcctggt
cctcctggtcccgctggtgcccgtggtgctgatggtaacactggtccttctggccctgct
ggtccacttggagctgctggacctccaggcttccccggtggccctggacctaaaggagag
atgggacctgccggtccctctggcccatctggacctcaaggacagagaggagagcctgga
acaaatggtgtttctggcccagttggtcctcctggtaaccctggtgctaatggtctcaac
ggtgctaagggagctgctggtacccctggagttgctggtacccctggtttccctggacca
agaggcggccctggcccccagggacctgctggaccttctggccccagaggtctttctggt
gaccctggacctgtaggggtgaagggagaatctggtgccaagggtgagcctggtaacatt
ggtgctcaagggcccactggtgctgctggtgatgagggcaaaagaggctcaactggtgag
cagggatcagctggacctgttggtctgcgcggggccagaggagctgctggaactcgtggt
cttcctggtctggctggtagaggaggatcaatgggcatgcctggtgcaaggggtgctgct
ggtgctcctggtgcacgtggacctcctggtgatgctggccgtgctggtgaggccggtctg
gttggagcaagaggtctccccggtagtcctggaagccctggaccccaaggaaaggaggga
cctgctggtccttccggtcaagatggccgcagtggacctcctggcccaactggacccaga
ggccagcctggtaacattggattccctggccctaaaggaccttctggtgagcctggcaaa
cctggagagaagggacttgctggtgctcctggtctaagaggcccccctggttctgatggt
aacaatggacctgctggtcctgttggacttgctggtggtcctggtgagaaaggagaggca
ggacctgctggtgctcctggtttccagggtcttcctggacctgctggacctgttggtgag
actggcaaacccggagacagaggtattcccggagatcaaggagttgctggacctgctggt
ggcaagggagagcgtggtaaccccggacctgctggtgcctctggagcccagggacccact
ggacctcgtggaccttctggtacacctggccctgatggaaacaagggtgaacctggttct
gctggtcttgctggtgctcaaggtccccagggatctgttggcatgcccggtgagcgtggt
ggtgctggtactcctggagtcaagggtgagaagggtgagcctggttacagaggcccagag
ggcaatgctggaagagacggttcacgtggagctcctggacccattggacctcctggacct
gctggtaccaacggggataaaggtgaggctggttccgctggtcctgctggccctgctggt
gctcgtggttctcccggagaacgtggtgaggctggccctgctggacctcctggatttgct
gggcctcctggtgctgatggccagcctggagctaaaggtgagaaaggtcccgctggtgga
aagggtgatgttggaccttccggtgtcgctggtcctgctggcaaccccggacctgcgggt
ccctctggtccatctggcccccctggtgctcgtggtgagactggtcccactggactgact
ggtttccctggtgctgctggaagagttggtccacctggtcctgctggtattgctggacct
cctggtcccactggtcatgctggaaaggatggtcctcgtggttctcgtggtgatgttgga
cctgctggacctcagggagagaatggcctgattggacctcctggcccacctggtgagaag
ggatcctctggagagagtggtgctaagggaccttcaggtactcctggacctagtggtctg
attggacctcagggaatcactggccttcctggctccagaggtgaacgtggaactcctggt
cccgttggtgcagttggtgagcctggtagagttggacctcctggtgcccctggtccccgt
ggtccaggtggtaacattggtctgcctggtatgactggtcctcagggcgaatctggacgt
gagggcagccctggtaatgatggagctcctggccgccctggtcttgctggtgttaagggt
gaccgtggagagcctggatctcctggccctcttggaattgctggtgctcctggacccttg
ggatcatctggtccagctggcagacctggaaaccgtggtgaggctggaccctctggatct
gttggaccagctggccctgccggtgcaagaggtgcccctggcccttccggaccccgtggt
gagaagggtgtggctggagaaaagggagagagaggcatgaagggactgcgtggacatcct
ggtctccagggaatgaatggagtcagcggacctagtggtgacagtggcccagcaggtcct
gccggacccgctggttccagaggccctgctggtcccactggcccatctggtaaggatggt
agacctggcactgctggtcctgttggacctgctggacatcgtggtcccccaggacaatct
ggacctgttggacctccaggatctcctggtctccctggaccccctggtgccgctggtggt
ggatatgatatttctggtggctatgatgagtacagagctgaccaggctgctctcagggct
aaggactatgaggtggatgccaccataaagtccctaaactctcagatcgacaacctgctt
tcacctgagggctccaagaagaaccctgcccgcacatgccgtgacatcaggctcagccac
cctgactggagcagtggtttctactggatcgatcccaaccagggctgcaccatggatgcc
attaaggccttctgcgacttcaccacaggtcagacctgtatctatgctcaacctgagagc
attgcacgcaagaactggtacagaagtacccaggagaagaagcatgtctggttcggcgag
accatcaatggtggcaccgagtttggctataatgatgagaccctgagcccacagtccatg
gcaacacagctagccttcatgcgtctgctggccaaccaggctgtccagaacatcacgtac
cactgcaagaacagcattgcctacatggatggtgagaacggcaacctgaagaaggctgcc
ttactgcagggctccaatgatgtggaactccgggcagagggcaacagccgcttcacctac
agcgttctggaggatggctgcactaaacacactggccagtggagcaagacagtcattgaa
tacagaacaaataaaccatctcgcctgcccatcctcgacattgcacctttggacattggt
ggcgctgatcaagaatttggtctggacattggcccagtctgtttcaaatga
DBGET
integrated database retrieval system
