KEGG   Tachysurus fulvidraco (yellow catfish): 113661827
Entry
113661827         CDS       T08119                                 
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
  KO
K10728  topoisomerase (DNA) II binding protein 1
Organism
tfd  Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:tfd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    113661827 (topbp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tfd03032]
    113661827 (topbp1)
   03400 DNA repair and recombination proteins [BR:tfd03400]
    113661827 (topbp1)
DNA replication proteins [BR:tfd03032]
 Eukaryotic type
  DNA Replication Initiation Factors
   Other initiation factors
    113661827 (topbp1)
DNA repair and recombination proteins [BR:tfd03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-B complex
     113661827 (topbp1)
SSDB
Motif
Pfam: BRCT PTCB-BRCT TopBP1_BRCT0 BRCT_2 RTT107_BRCT_5 LIG3_BRCT ECT2_BRCT0 BRCT_TopB1_SLF1
Other DBs
NCBI-GeneID: 113661827
NCBI-ProteinID: XP_027032095
LinkDB
Position
25:complement(10299873..10319576)
AA seq 1529 aa
MSKESRDVYMVKFVECNGHKSELGIKAYEAIVELQSEKYVQTIDEGSVLELEHNDKSLYV
FSDFTSDAFEHCRKLGCRIVSPLVVLFCLQQQRCVPKAEQPVYNMAMADVTVCCTSLDKD
ARTEVMDLVQLMGGRVYRDLNVSVTQLVAGEVGSKKYLVAASLGKPILLPTWVRACWEKS
QDSLFRYTDLRMEDYQCPVLKGCTVCVTGLSTVERKEVQRLCELHGGSYTGQLKMNECTH
LIVSEPSGQKYEFAKKWNVFCISIHWLFDSIEKGFCQDESRYAVEREDRRKEKPGRPNTS
TPTGSNKTDGPSLLGLSHISNVSMNVNETAMTTAIVSRIETADPIDTFDPTICPTDDLLD
GCKLYLCGVLGKRLEKLRRLVNSAGGLRFNQLCEELTHVVMGEPDQDVQSFLAKASHRPH
VVTVQWLLDSFSHGSLLPVESYFHPSFLPPAPAHVEIPAPRPFSSHPSRPSFAALPAPSP
NRHARAEEELLSQYVDNNQTVVEIAPAPDNKNNTCRSELLDPAAPGHDSTVAESSDGGLF
IRKRFLLVGFGSEAEAQLSMLVVENYGKVLVGRFRGVADYAIVPLLGCEVEATVDEVVTD
TWLAMCVEQQCILPVSSHPLFTPVVVKEGCSPLRDCVLSVSQFTGAERESLIQLARHLGA
SVQDYFVRTANQRKGMLASTHLVLQTPEGTKYQAAQKWGLPAVTIRWIIESARTGKRAEE
RSYLVDLPPSPEHSEASFIGVSQKAADPPVPVRLSPEIPLLGPQSSTSVTPLDTGRLQSR
SVHSVLRKLKKGEEGEVEVTTPAQEESRGNLQKELQLDTPSRFLSRDKLFGPSFNIKDVF
DHLKTPGNKPQHSQGAETPLSEVIERNLKAAVANSNRSHVMTLAALTASPQLGKEPEQNI
NKPVEEKTSAPLAGVVVCVSKKLIKKQNELNAMAASLGADFRWSCDDSVTHYIYQGKVGD
NTKEYKAVKERSLHIVSQHWLQACAEEQKRVPESLYPFTFNPKMSLMLSQVTDSTQKSPP
LSTTRSKCRPLIDDDEDDARIGLVDITADISTPQREPAEREQPQPTSIERKDLTETLEMR
ENLQRQLQEIMSATKLTSGRRASSRLARMGSGGLDSPNTPEILGRMGRRSRTLEALRMSR
QAAVDVNTEASQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSEPLAILPPPHTDQTAH
VSMTDSELVDMAACGVIEEHMKRTEKPTSFNTEPEGSKKPETPRPAFSISKSSMLADLQL
EEEEEIEKKLVRKEPPRFQLSSLNPQERIDYSHLIEELGGILLEKQCFDPSCTHIIVGYP
LRNEKYLAAMAAGKWILHRSYLEACRAEGYFIPEEDYEWGSHSILDALPSINSQQKRLAL
SALRWRKSLQGCKDKDGAFGGWTVMLNIDQARDAGFRRLLQSGGAKVLPSPSPSLYKETT
HLFADFSRLGPNDVRVDVTEAVAHGVKCLRPEYIADYLMQEPSPPMDAYYLPGEVANGPP
ENSHQGQNTPSRKRKASEDMAAVKKSRVR
NT seq 4590 nt   +upstreamnt  +downstreamnt
atgtccaaagagagccgggatgtgtacatggtgaaatttgttgagtgtaatggacataaa
agtgagcttggcatcaaagcttatgaggccatagtggagctgcagtctgagaaatatgtg
cagactattgatgaaggatctgtgctggagttggaacacaacgacaagtccttgtacgtg
ttcagcgatttcactagcgatgcatttgaacactgcaggaagctggggtgcaggatagtg
agtcctctggtagtgctgttctgccttcagcagcaaaggtgtgtaccaaaggcagagcag
ccagtttacaacatggccatggctgatgttacagtgtgctgcaccagtctggacaaagat
gcacggacagaagtgatggacttggtccagctgatgggtgggcgcgtctaccgagacctc
aatgtgtctgtcactcaactggtagcaggtgaagtgggcagtaaaaagtacctggtggct
gccagtctagggaagcccatccttctaccaacctgggtcagagcatgctgggagaaatct
caggacagtttgttccgatacacagacctgcgtatggaggattatcagtgtcccgttctc
aaaggatgcactgtgtgtgtgactggtctttccacggtggagcgtaaagaggtgcagagg
ctgtgtgaactgcatggagggagctacactggccagctcaaaatgaacgaatgcactcac
ctcattgtcagcgaaccctcaggtcagaagtacgagtttgcaaagaagtggaatgtgttc
tgcatctccattcactggctgtttgacagtatcgagaagggcttctgtcaggatgagagt
cgttacgctgtagaacgtgaggacaggcggaaggagaagcctggaagacccaacacctcc
actcccactggctcaaataagacagatggaccatctttgcttggactgagccatatctca
aatgttagcatgaatgtcaacgaaacagccatgacaactgcaatagtgagccgcatagag
acagcggatcctatcgacacatttgatcctaccatctgtccaacagatgacttattagat
ggctgcaagctatacctatgtggtgtgttggggaagaggttggagaaactgcggcggttg
gtgaactctgcaggaggcctgcgcttcaatcagctttgtgaagaacttactcacgttgtg
atgggagaaccagaccaggatgttcaaagctttcttgctaaagcctctcacagaccacat
gtcgtcacagtgcagtggttgctggatagtttttctcatggctctctgcttccagtggag
agctacttccacccttcattcctccctcctgctccagcccacgtggaaattcctgctccc
cggcctttttcctcacacccctctaggccatcttttgctgccttgccagcccccagccct
aaccgacatgccagggctgaggaagaattactctcgcaatacgtcgacaataaccagact
gtagtggaaatagctccagccccagataataaaaacaacacttgcagatctgaactgcta
gacccagctgcaccagggcatgactctactgtagctgaatcctcagatggaggtttgttt
attaggaaacgcttcctcttggtgggcttcggttcagaagcagaggcacagctctctatg
ttggttgtggagaactacggaaaggttttagttggccgtttcagaggcgtagccgattat
gctatagtgcctctgctaggctgtgaggtggaggccacagtggatgaagtggtcacagac
acctggctggcaatgtgtgtagagcagcagtgcattctgccagtgtcatctcatccattg
ttcaccccagtagtggtgaaggagggctgctctcctctcagagactgtgtgctgtcagtt
agccaatttaccggtgcagagagagagtcactcattcaacttgccagacatctgggagca
agtgtacaggactattttgtgcgcactgctaatcagaggaaaggcatgttggctagcact
caccttgtcctacagactcctgaaggcaccaagtaccaggcagcacagaagtgggggctg
cctgctgtgaccatacgctggataatagagtcggccagaacgggcaaacgtgctgaggag
agaagctatctggtggatctgccaccatctcctgagcacagtgaggccagtttcattgga
gtatctcagaaagcagcagaccctcctgtacctgtgcgtctctctccagagattcctctg
ctaggtccacagagcagcacctctgtaacaccgttggacacgggacgtctgcagagccgc
agcgtccactccgttctccgcaagttgaagaaaggtgaggagggagaggtagaggtcaca
actccagctcaagaagaaagcagaggaaacttgcaaaaagaacttcagcttgatacacca
tcacgcttcctcagtagagacaagctttttggaccttcctttaacattaaggatgtgttt
gaccatttaaaaacccctggtaataagcctcagcacagtcagggggcagagactccccta
agtgaggtgatcgagaggaatttaaaagcagctgtggctaatagcaaccgtagtcatgtc
atgacccttgctgccctgactgcaagccctcaattgggcaaagagccagaacagaacata
aacaaaccggtagaggaaaagacatcagctccacttgctggagtggtggtttgtgtgagt
aagaaactcattaaaaagcagaatgagctaaatgcaatggctgcatccctcggagcggac
ttcaggtggtcttgtgatgattcggtcacccactatatctaccagggcaaagtgggagac
aacactaaagagtacaaggcagtgaaggagagaagcctgcacattgtgtcccagcactgg
ctgcaggcgtgtgcagaggagcagaaacgagtgcctgagtcactctaccctttcaccttt
aaccctaaaatgagcctgatgctaagccaggtgacagacagcacccaaaaatctcctccc
ctttccacaacccgctctaaatgcagacctctcatcgatgatgatgaagatgatgcacgg
attgggcttgtggacatcacagcagatatctctactcctcagagagagcctgcagagcgt
gagcagcctcaaccaaccagtattgaaaggaaagacttgacagagactctggagatgaga
gagaacttgcagaggcagctacaggagattatgtctgccacaaaattgaccagtggtcgg
cgagcatcctctagattggcccgaatgggttcagggggtctagactctccaaatactcct
gagattttgggccgaatgggtagacgcagcaggacactggaggctttacgtatgtcccgt
caggcagcagtggatgtgaacacagaagcatcccagagtgagcagatagtgtgggatgac
cccacggcaagagaggagagggcaaagttagctgataatctgcagtggccaggcagtcca
tctcaacattcagaacctcttgccattctccctccaccgcacactgatcaaacggctcac
gtctccatgactgactccgaactggtggacatggctgcctgtggtgtaatagaagagcac
atgaaacggacagaaaaaccaacaagctttaacactgagcctgagggttctaaaaagcct
gaaaccccaaggccggctttctccatctccaaatcttcaatgctagctgacttacagctt
gaggaagaggaggagattgagaagaaactggtgaggaaggagcctccacgcttccagctg
tcttcacttaacccacaggagcgcattgattacagtcaccttatagaggagctgggtggt
atcttactagaaaagcagtgttttgaccctagctgtactcacatcattgtgggttatcct
ctgaggaatgagaaatacctggcagccatggcagctggcaaatggattcttcaccgctca
tacctggaggcctgtcgcgctgagggatacttcataccagaggaggattatgaatggggt
agccactctattctggatgctcttccctctataaactcccaacagaagagactggcatta
tcagccttgcgctggagaaaatcattgcagggttgcaaagataaagatggtgcatttggt
ggctggacagtgatgttgaacatagaccaggccagagatgcaggattcagaagattgctg
cagtctggaggagcaaaggtattgccaagcccatctccctccctgtataaggaaaccact
catctcttcgcagacttcagccggctaggaccaaacgatgtgagagtggatgtgactgag
gccgttgctcatggagttaaatgcctcaggcctgagtatattgctgattacctcatgcag
gaaccttcaccgccaatggatgcatattatcttcctggagaagtggcgaatgggcctcct
gaaaactcccaccaaggccagaacaccccctcacgcaagcgcaaggcctcagaggacatg
gccgctgtgaagaaaagcagagttaggtga

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