Tachysurus fulvidraco (yellow catfish): 113661827
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Entry
113661827 CDS
T08119
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113661827 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tfd03032
]
113661827 (topbp1)
03400 DNA repair and recombination proteins [BR:
tfd03400
]
113661827 (topbp1)
DNA replication proteins [BR:
tfd03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
113661827 (topbp1)
DNA repair and recombination proteins [BR:
tfd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
113661827 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
113661827
NCBI-ProteinID:
XP_027032095
LinkDB
All DBs
Position
25:complement(10299873..10319576)
Genome browser
AA seq
1529 aa
AA seq
DB search
MSKESRDVYMVKFVECNGHKSELGIKAYEAIVELQSEKYVQTIDEGSVLELEHNDKSLYV
FSDFTSDAFEHCRKLGCRIVSPLVVLFCLQQQRCVPKAEQPVYNMAMADVTVCCTSLDKD
ARTEVMDLVQLMGGRVYRDLNVSVTQLVAGEVGSKKYLVAASLGKPILLPTWVRACWEKS
QDSLFRYTDLRMEDYQCPVLKGCTVCVTGLSTVERKEVQRLCELHGGSYTGQLKMNECTH
LIVSEPSGQKYEFAKKWNVFCISIHWLFDSIEKGFCQDESRYAVEREDRRKEKPGRPNTS
TPTGSNKTDGPSLLGLSHISNVSMNVNETAMTTAIVSRIETADPIDTFDPTICPTDDLLD
GCKLYLCGVLGKRLEKLRRLVNSAGGLRFNQLCEELTHVVMGEPDQDVQSFLAKASHRPH
VVTVQWLLDSFSHGSLLPVESYFHPSFLPPAPAHVEIPAPRPFSSHPSRPSFAALPAPSP
NRHARAEEELLSQYVDNNQTVVEIAPAPDNKNNTCRSELLDPAAPGHDSTVAESSDGGLF
IRKRFLLVGFGSEAEAQLSMLVVENYGKVLVGRFRGVADYAIVPLLGCEVEATVDEVVTD
TWLAMCVEQQCILPVSSHPLFTPVVVKEGCSPLRDCVLSVSQFTGAERESLIQLARHLGA
SVQDYFVRTANQRKGMLASTHLVLQTPEGTKYQAAQKWGLPAVTIRWIIESARTGKRAEE
RSYLVDLPPSPEHSEASFIGVSQKAADPPVPVRLSPEIPLLGPQSSTSVTPLDTGRLQSR
SVHSVLRKLKKGEEGEVEVTTPAQEESRGNLQKELQLDTPSRFLSRDKLFGPSFNIKDVF
DHLKTPGNKPQHSQGAETPLSEVIERNLKAAVANSNRSHVMTLAALTASPQLGKEPEQNI
NKPVEEKTSAPLAGVVVCVSKKLIKKQNELNAMAASLGADFRWSCDDSVTHYIYQGKVGD
NTKEYKAVKERSLHIVSQHWLQACAEEQKRVPESLYPFTFNPKMSLMLSQVTDSTQKSPP
LSTTRSKCRPLIDDDEDDARIGLVDITADISTPQREPAEREQPQPTSIERKDLTETLEMR
ENLQRQLQEIMSATKLTSGRRASSRLARMGSGGLDSPNTPEILGRMGRRSRTLEALRMSR
QAAVDVNTEASQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSEPLAILPPPHTDQTAH
VSMTDSELVDMAACGVIEEHMKRTEKPTSFNTEPEGSKKPETPRPAFSISKSSMLADLQL
EEEEEIEKKLVRKEPPRFQLSSLNPQERIDYSHLIEELGGILLEKQCFDPSCTHIIVGYP
LRNEKYLAAMAAGKWILHRSYLEACRAEGYFIPEEDYEWGSHSILDALPSINSQQKRLAL
SALRWRKSLQGCKDKDGAFGGWTVMLNIDQARDAGFRRLLQSGGAKVLPSPSPSLYKETT
HLFADFSRLGPNDVRVDVTEAVAHGVKCLRPEYIADYLMQEPSPPMDAYYLPGEVANGPP
ENSHQGQNTPSRKRKASEDMAAVKKSRVR
NT seq
4590 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaagagagccgggatgtgtacatggtgaaatttgttgagtgtaatggacataaa
agtgagcttggcatcaaagcttatgaggccatagtggagctgcagtctgagaaatatgtg
cagactattgatgaaggatctgtgctggagttggaacacaacgacaagtccttgtacgtg
ttcagcgatttcactagcgatgcatttgaacactgcaggaagctggggtgcaggatagtg
agtcctctggtagtgctgttctgccttcagcagcaaaggtgtgtaccaaaggcagagcag
ccagtttacaacatggccatggctgatgttacagtgtgctgcaccagtctggacaaagat
gcacggacagaagtgatggacttggtccagctgatgggtgggcgcgtctaccgagacctc
aatgtgtctgtcactcaactggtagcaggtgaagtgggcagtaaaaagtacctggtggct
gccagtctagggaagcccatccttctaccaacctgggtcagagcatgctgggagaaatct
caggacagtttgttccgatacacagacctgcgtatggaggattatcagtgtcccgttctc
aaaggatgcactgtgtgtgtgactggtctttccacggtggagcgtaaagaggtgcagagg
ctgtgtgaactgcatggagggagctacactggccagctcaaaatgaacgaatgcactcac
ctcattgtcagcgaaccctcaggtcagaagtacgagtttgcaaagaagtggaatgtgttc
tgcatctccattcactggctgtttgacagtatcgagaagggcttctgtcaggatgagagt
cgttacgctgtagaacgtgaggacaggcggaaggagaagcctggaagacccaacacctcc
actcccactggctcaaataagacagatggaccatctttgcttggactgagccatatctca
aatgttagcatgaatgtcaacgaaacagccatgacaactgcaatagtgagccgcatagag
acagcggatcctatcgacacatttgatcctaccatctgtccaacagatgacttattagat
ggctgcaagctatacctatgtggtgtgttggggaagaggttggagaaactgcggcggttg
gtgaactctgcaggaggcctgcgcttcaatcagctttgtgaagaacttactcacgttgtg
atgggagaaccagaccaggatgttcaaagctttcttgctaaagcctctcacagaccacat
gtcgtcacagtgcagtggttgctggatagtttttctcatggctctctgcttccagtggag
agctacttccacccttcattcctccctcctgctccagcccacgtggaaattcctgctccc
cggcctttttcctcacacccctctaggccatcttttgctgccttgccagcccccagccct
aaccgacatgccagggctgaggaagaattactctcgcaatacgtcgacaataaccagact
gtagtggaaatagctccagccccagataataaaaacaacacttgcagatctgaactgcta
gacccagctgcaccagggcatgactctactgtagctgaatcctcagatggaggtttgttt
attaggaaacgcttcctcttggtgggcttcggttcagaagcagaggcacagctctctatg
ttggttgtggagaactacggaaaggttttagttggccgtttcagaggcgtagccgattat
gctatagtgcctctgctaggctgtgaggtggaggccacagtggatgaagtggtcacagac
acctggctggcaatgtgtgtagagcagcagtgcattctgccagtgtcatctcatccattg
ttcaccccagtagtggtgaaggagggctgctctcctctcagagactgtgtgctgtcagtt
agccaatttaccggtgcagagagagagtcactcattcaacttgccagacatctgggagca
agtgtacaggactattttgtgcgcactgctaatcagaggaaaggcatgttggctagcact
caccttgtcctacagactcctgaaggcaccaagtaccaggcagcacagaagtgggggctg
cctgctgtgaccatacgctggataatagagtcggccagaacgggcaaacgtgctgaggag
agaagctatctggtggatctgccaccatctcctgagcacagtgaggccagtttcattgga
gtatctcagaaagcagcagaccctcctgtacctgtgcgtctctctccagagattcctctg
ctaggtccacagagcagcacctctgtaacaccgttggacacgggacgtctgcagagccgc
agcgtccactccgttctccgcaagttgaagaaaggtgaggagggagaggtagaggtcaca
actccagctcaagaagaaagcagaggaaacttgcaaaaagaacttcagcttgatacacca
tcacgcttcctcagtagagacaagctttttggaccttcctttaacattaaggatgtgttt
gaccatttaaaaacccctggtaataagcctcagcacagtcagggggcagagactccccta
agtgaggtgatcgagaggaatttaaaagcagctgtggctaatagcaaccgtagtcatgtc
atgacccttgctgccctgactgcaagccctcaattgggcaaagagccagaacagaacata
aacaaaccggtagaggaaaagacatcagctccacttgctggagtggtggtttgtgtgagt
aagaaactcattaaaaagcagaatgagctaaatgcaatggctgcatccctcggagcggac
ttcaggtggtcttgtgatgattcggtcacccactatatctaccagggcaaagtgggagac
aacactaaagagtacaaggcagtgaaggagagaagcctgcacattgtgtcccagcactgg
ctgcaggcgtgtgcagaggagcagaaacgagtgcctgagtcactctaccctttcaccttt
aaccctaaaatgagcctgatgctaagccaggtgacagacagcacccaaaaatctcctccc
ctttccacaacccgctctaaatgcagacctctcatcgatgatgatgaagatgatgcacgg
attgggcttgtggacatcacagcagatatctctactcctcagagagagcctgcagagcgt
gagcagcctcaaccaaccagtattgaaaggaaagacttgacagagactctggagatgaga
gagaacttgcagaggcagctacaggagattatgtctgccacaaaattgaccagtggtcgg
cgagcatcctctagattggcccgaatgggttcagggggtctagactctccaaatactcct
gagattttgggccgaatgggtagacgcagcaggacactggaggctttacgtatgtcccgt
caggcagcagtggatgtgaacacagaagcatcccagagtgagcagatagtgtgggatgac
cccacggcaagagaggagagggcaaagttagctgataatctgcagtggccaggcagtcca
tctcaacattcagaacctcttgccattctccctccaccgcacactgatcaaacggctcac
gtctccatgactgactccgaactggtggacatggctgcctgtggtgtaatagaagagcac
atgaaacggacagaaaaaccaacaagctttaacactgagcctgagggttctaaaaagcct
gaaaccccaaggccggctttctccatctccaaatcttcaatgctagctgacttacagctt
gaggaagaggaggagattgagaagaaactggtgaggaaggagcctccacgcttccagctg
tcttcacttaacccacaggagcgcattgattacagtcaccttatagaggagctgggtggt
atcttactagaaaagcagtgttttgaccctagctgtactcacatcattgtgggttatcct
ctgaggaatgagaaatacctggcagccatggcagctggcaaatggattcttcaccgctca
tacctggaggcctgtcgcgctgagggatacttcataccagaggaggattatgaatggggt
agccactctattctggatgctcttccctctataaactcccaacagaagagactggcatta
tcagccttgcgctggagaaaatcattgcagggttgcaaagataaagatggtgcatttggt
ggctggacagtgatgttgaacatagaccaggccagagatgcaggattcagaagattgctg
cagtctggaggagcaaaggtattgccaagcccatctccctccctgtataaggaaaccact
catctcttcgcagacttcagccggctaggaccaaacgatgtgagagtggatgtgactgag
gccgttgctcatggagttaaatgcctcaggcctgagtatattgctgattacctcatgcag
gaaccttcaccgccaatggatgcatattatcttcctggagaagtggcgaatgggcctcct
gaaaactcccaccaaggccagaacaccccctcacgcaagcgcaaggcctcagaggacatg
gccgctgtgaagaaaagcagagttaggtga
DBGET
integrated database retrieval system