Tachysurus fulvidraco (yellow catfish): 113662394
Help
Entry
113662394 CDS
T08119
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd00100
Steroid biosynthesis
tfd01100
Metabolic pathways
Module
tfd_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
113662394 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
tfd01006
]
113662394 (fdft1)
Enzymes [BR:
tfd01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
113662394 (fdft1)
Prenyltransferases [BR:
tfd01006
]
Terpene biosynthesis
Squalene/phytoene synthase
113662394 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
GST_C_8
Motif
Other DBs
NCBI-GeneID:
113662394
NCBI-ProteinID:
XP_027032964
LinkDB
All DBs
Position
9:22515660..22526718
Genome browser
AA seq
454 aa
AA seq
DB search
MAGVCCKSTAPFSVFKRTLSVRNTASAPRSAPVGCGRRGAQEGCALLARPLHHYTTGLHR
YPTHLFCSSVQESMSESLRACYVYLNQTSRSFAAVIQALDGQLRHAVCIFYLVLRALDTV
EDDMSIPLDKKVPLLHHFHTFLYQPDWCFMESNEKDRQVLEDFPSISVEFRNLAQEYQDV
ISDICLRMGVGMAEFLEKKVGSMQEWDTYCHYVAGLVGVGLSRLFSASLLEDPEVGRDTE
LANSMGLFLQKTNIIRDYLEDQQEGRSFWPEEAWSQFASRLEDFSEPQHLSSALSCLNML
VTDALRHVPDVIAYLSRLRNQSVFNFCAIPQVMAIATLSACYNNPLVFQGVVKIRKGQAV
TLMMEATNMQAVTSMIAQYSQEILQKVSHSDPSRANTLYILEVIQEKTLSKAALPSRAHN
FSHVYLSAATILAFFSWQYLNATRSPSSADMQGR
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggtttgttgtaagagcacggcgccgttctctgtgtttaagcgcacgctgtca
gtgcgcaacacggcctcagctccgcgctctgctccggtgggctgcgggagacgaggcgct
caggagggctgtgcgctactcgcccgcccgctgcaccactacaccaccggccttcaccga
tatccaacgcatttgttttgctcttctgtccaggagtccatgagcgagagtttgagggcg
tgttatgtttacctgaaccaaacgagcaggagcttcgcggctgtgattcaggccctggac
ggacagctgcgtcatgcagtgtgtatattctatttagttcttcgagccctggacacggtt
gaggatgatatgagcattcctttggacaaaaaagtccctctcctgcatcatttccacact
ttcctctaccaaccagattggtgttttatggagagcaacgagaaagacagacaagttctt
gaagatttcccgtcgatttcagttgagttcaggaacctagcacaggaatatcaggatgtt
atttcagacatttgcctccgaatgggggtcgggatggcagaatttcttgagaagaaagtc
ggctcgatgcaggaatgggatacgtattgtcactacgtggctggtctggtaggtgtcggt
ctgtctcgacttttctccgcatccctgctagaggaccccgaggtaggtcgggatactgag
ctggccaactctatgggcctctttttacagaagactaacattatcagagactacctggag
gaccagcaggaaggacgatccttctggcctgaggaggcttggagtcagtttgcctctcgt
ctggaagacttttctgaaccgcagcacctgagctcagctctgtcctgccttaacatgtta
gtgacggacgccctgcgccacgttcccgacgtcattgcttacctttcccgcctccgcaac
cagagtgtcttcaacttctgcgccatcccacaggtgatggcaatagcgactctctctgcc
tgctacaacaaccccctggtgtttcagggggtggtgaagatcaggaaggggcaggctgtc
actctgatgatggaggccaccaatatgcaagctgtaacgagcatgatcgcacagtacagc
caagagatcctgcagaaagtgtcacactctgatccatcacgggctaacactctgtacata
ctcgaagtcatccaggaaaagactctttccaaagcagcgttgccttcccgtgctcacaat
ttctcacacgtttatctttctgctgctaccattttggcgtttttcagctggcagtatctg
aacgccactcggtctccaagcagcgctgacatgcagggacgctga
DBGET
integrated database retrieval system
