Tachysurus fulvidraco (yellow catfish): 113662683
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Entry
113662683 CDS
T08119
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
113662683 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfd03400
]
113662683 (msh2)
DNA repair and recombination proteins [BR:
tfd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
113662683 (msh2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
113662683
NCBI-ProteinID:
XP_027033553
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Position
8:9678041..9687664
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AA seq
938 aa
AA seq
DB search
MAVQPKQNLCMDSVSESGFLNFYFSMPEKPDTTVRIFDRSDYYTVHGKDASFAAKEVFKT
NGVIKMLGAGSRRLESVVLSKMNFEAFVRDLLLVRQYRVEVYRNKTGSKSSKDHDWQIAY
KASPGNLTQFEEVLFGSGGGLGEGAAGVVGIRIGTGSDGQRVVGVGYVDSILRKLGVCEF
PDNDQFSNLEALLVQIGPKECVLPAGDTAGDLGKLREVVQRGGILFSDRKKAEFTTKDIV
QDLNRLLKAQKGETVSSAALPEMEKQIAMSSLAAVIKYLELLSDEANFSSYKMTTFDLSQ
YMRLDNAAVKALNLFQASSDDPTGTHSLAGLLNKCRTPQGQRLVSQWLKQPLMDKNKIEE
RLDLVECFVEDSELRQSCHEDLLRRLPDMNRLAKKFQRQNANLQDCYRVYQAVGQLPGLV
LALERHSGKHQVLLNAAFITPFNDLVSDFSKFQEMIETTLDMNQIEHHEFLVKPSFDPTL
SELREDMDKLEKSMQAALNSAARELSLDAGKTIKLESNAQIGYYFRVTCKEEKTLRNNKK
FTTLDVQKNGVRFTNSKLSSLNEEYTKNREEYEEAQNAIVKEIISIAAGYVDPLQTLNDV
IAQLDAVVSFAVVSHAAPVPYVRPTILEKGSGRLILKGARHPCVEAQDDVAFIPNDVTFT
KGKEMFHIITGPNMGGKSTYIRQVGVIVLMAQVGCFVPCDEAEVSVVDSLLARVGAGDSQ
IKGVSTFMAEMLETASILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFC
LFATHFHELTALAQQVSTVNNLHVTALTTDNTLTMLYRVKPGVCDQSFGIHVAELANFPK
HVISYAREKALELEEFQDVSREDQDAGPEAKKRCLEKKDGEKIIEDFLGKVKALPVQDMT
DEAIKAELRKLKAEVVVHNNSFVNDIVARIENAKTTLA
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggccgttcaaccaaaacagaacttgtgcatggacagtgtgtccgaaagcggcttccta
aacttttatttttccatgccggaaaaaccggacactacggttagaatatttgaccgcagc
gattactacaccgtgcatggaaaagatgcgagctttgcggcaaaagaagtctttaagacc
aatggagttattaaaatgctcggtgcaggcagcaggaggctggagagtgtggtgctcagt
aagatgaactttgaggcgtttgtgagagacttgctgttggtcaggcagtaccgtgtggaa
gtgtacaggaataagacgggaagcaagagcagcaaagatcatgactggcaaatagcctac
aaggcctctccaggaaacctgacccagtttgaggaggttctgtttggtagcggaggaggt
ttaggggagggggctgctggagtggtcgggatccgcattggaacaggaagtgatggacag
cgtgtcgtgggtgttgggtatgttgacagcatactccgaaagcttggggtgtgcgagttt
ccagataacgaccagttttccaatctggaagctctccttgtgcagattggacccaaagag
tgtgtgcttcctgctggagatacagcaggagatctgggtaaactaagagaggtggtgcag
cgtggaggtattcttttctcagacaggaagaaggcagagtttacaaccaaagacatagtt
caggatctgaaccgtttactgaaggctcagaagggagagacagtatctagtgctgcactc
ccagagatggagaaacagattgctatgtcttctttggctgcggtcatcaagtatctggag
ctcctttctgacgaggccaacttcagttcctacaaaatgaccacatttgacctcagccag
tacatgcggctcgacaacgctgctgtgaaagcgcttaacctcttccaagcttcctctgat
gatcccacaggtacacactccctggcaggacttttgaacaagtgccgcacacctcagggc
caacgactggtcagtcagtggcttaaacaacctctaatggacaaaaacaagattgaggaa
aggctagaccttgtggagtgttttgtggaggactccgagctgagacagagctgccacgag
gacctgctgcgtcggttgcccgacatgaatcgcttagctaaaaaatttcagcgtcagaac
gccaatctgcaggactgttatcgtgtctaccaggctgtgggtcagctgccaggcctggtg
ctggccctagagagacattctggcaaacatcaagtcctgttgaacgcagcgttcattaca
cccttcaatgacctcgtctctgatttctccaagtttcaggagatgatcgaaacgacgctg
gacatgaaccagattgagcaccatgaatttctggtaaaaccctcctttgaccccacactg
agtgaactgagggaggacatggacaagctggagaaaagcatgcaggcagctttaaacagt
gcagcccgagagcttagtttggatgcaggcaaaacaataaagctggaatccaatgcacag
ataggatactacttccgtgtgacctgcaaagaggagaaaaccctgcgcaacaataagaaa
ttcacaaccttggatgtgcaaaagaacggcgtgcgtttcaccaacagtaagctgagctct
ttgaatgaggagtacaccaaaaacagggaagagtatgaggaggctcagaatgccattgtt
aaagagatcatcagcatcgctgctggctatgtggacccactgcagaccttgaatgatgtg
attgcacagttggatgcagtggtgagctttgcagttgtgtcccatgctgcccctgtgccc
tatgtgaggccgacgatactggagaaagggagcggcaggttaatcctgaagggtgcacgt
catccttgtgtggaagcccaggacgacgtggcctttattcccaatgatgtgaccttcact
aaaggaaaggagatgtttcacatcattacaggtccaaacatgggtgggaaatccacctac
attcgtcaggtgggtgtgattgtgctgatggcgcaggttggctgctttgtgccatgtgat
gaagcggaggtgagtgtggtcgacagcctgctggcccgtgttggtgcaggggacagccag
attaaaggagtgtccacatttatggctgagatgcttgagacagcgtctattttacgttct
gccactgaggactctctgatcataattgatgaactggggagagggacttccacatatgat
ggctttggcttggcttgggccatctctgagtacattgccacacgcctgaaatctttctgc
ctgtttgccacacacttccatgagctgaccgctttagcacaacaagtgtctactgtgaac
aacctccatgtcactgcactgaccacagacaacactctcaccatgctctacagggtgaaa
cccggtgtgtgtgaccagagctttgggattcacgtggctgagctggctaacttccccaag
catgtcatttcttatgctcgggaaaaggctttggagcttgaggagtttcaggatgtgtct
agagaagatcaggatgctggacctgaagctaaaaagcgttgcttggagaaaaaagatggt
gagaagattattgaggatttcttgggaaaggtgaaggctctgcctgtccaggatatgact
gatgaggctatcaaagcggagctacgcaaactaaaggctgaggtggtcgtccacaacaac
tcctttgttaatgacatagttgcacgtattgagaatgcaaaaactacattggcataa
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