Thermosipho ferrireducens: JYK00_01895
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Entry
JYK00_01895 CDS
T07656
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tfe
Thermosipho ferrireducens
Pathway
tfe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tfe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JYK00_01895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfe03021
]
JYK00_01895
03400 DNA repair and recombination proteins [BR:
tfe03400
]
JYK00_01895
Enzymes [BR:
tfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JYK00_01895
Transcription machinery [BR:
tfe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JYK00_01895
DNA repair and recombination proteins [BR:
tfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JYK00_01895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QTA38314
LinkDB
All DBs
Position
complement(381185..386140)
Genome browser
AA seq
1651 aa
AA seq
DB search
MGSTFKRKIAQVTVGVASPEVIRSWSSGEVKKPETINYRTFKPEKDGLFCERIFGPTKDY
ECACGKYKGKKYEGTVCERCGVRVESKEARRKRMGHIDLVAPVVHIWYLKSSPSILSSLL
SVPAKELENVVYYGGKRIIEKVLIVTDPKNTDFIKGSLLYQTEYEIYSQKLDFEVMPGVI
IKSPRSPVVTDIDGEVRIRKEKTHTDREITWVDVRNISRSPHRVYTGMVLNVKNGDKIEQ
GEELVSEMKIEPIYSPFDGTVEIDEISETITIKPLTTSKEMPLTFSLPYGVKPTVSDGSK
VKKGDQLTTGTILPAVIASVSGIVSFGKELNVRPREDGKYEVLATGNVYIENVVEGKSYP
LFEGSLVYVEDGQEVSKGDIIADRFLFEDEYLTLEEYKIFEDHYPAMFTAETEVENDRPI
VVITKIDDDVSLETGLSIGDIITDDQYGAYRVLYGEKIEAESGAAAVKKLLQNIDLEKLK
VEIESELKKISKSSGRAKKLLRRLKIVKDLIKSGAQPEWMVLEAIPVVPPDIRPMIQVEG
GRFATTDLNDLYRRVINRNNRLKKLYEMNSPEIIVKNEKRMLQEAVDSLLYNGRMGKAVT
DRNGRPLKSLTDLVKGKKGRFRRNLLGKRVDYSGRAVIVVGPHLKIHECGLPKKMAMELF
KPFVLAELINRDEESSKTARKMKKAIIEKELPQAWEVLEEVIKGHPVLLNRAPTLHRMSI
QAFEPKLIEGNAIQLHPLVCPPFNADFDGDQMAVHVPLSAAAQAEAKFLMLSRYNIISPA
HGKPISMPGKDIVAGVYYLTMVDKDYETVNPEDIKWKFSSIDEAELAYEFGYIKLHDPIL
VKVDDKVVKTTYGRLIFANIVPEKFRDYNKTYGKGAIKELVYKTFKTYGVDRTADLLDDI
KDLGFHYATVSGLTVSITDFYISPERENIIKNARERIKKVEALYEQGFLSDEERYRETIK
IWAKATEEVQDATFEYLGKDPFNPIFIMVDSGARGNKDQLKQLAGMRGLMADPSGRTIEI
PIISNFRDGLSVLEFFISTHGARKGSADTALRTSSAGYLTRRLVDVAQSVVITTTDCGTY
DGVRATILKSSDGLRVEKLEEFLFGRVLAKEVYDPETNEVLENPKTGRKYTRDTMLDDDD
ARFLGNYAKRIPVVKSYEIDLQQPMIPENYAEIVEGFVSKDGVSYEQGSELNWEVIKAAK
EAGIKALKIKEYPVVGKVSVEVVLSPKDMRQLVIEDELIDSTTAKILEENNVESVEVRPD
IIVRSVLTCEAEHGVCAKCYGMDLSNHKIISVGESVGIVAAQSIGEPGTQLTMRTFHTGG
IATAADITQGLPRAEELFEARKKLKEPEGVFSAVKGFIKDIVEDETGRKKVYVEDEAGDI
HEYEIPTKVKVSVKKGQKVLPGQSLTTGAIRPRKSLDTLSVDATALYLLKEIKKVYVEQG
VDIHDKHFEIIIRQMLDKVEITDPGDTDFLPGDLVRLQTVVRINKEILTENAHVENNKKR
VVGKVLAKPLIGEDENGEIVEIAPEGVEVTEEIVEKAVSLGIKDLIVKDGEEEKTIYQIL
PKEPIKYRRRLLRITKASLEHVGWLSAASFQQTPQVLTEAAIEGAIDDLLGLKENVIVGQ
LIPAGTGLDMFANVQIEETPRMAKEEKEKMA
NT seq
4956 nt
NT seq
+upstream
nt +downstream
nt
atgggttcaacttttaagaggaaaattgcacaggtaactgttggtgtggcttctccagaa
gttattagaagctggtcaagtggagaagtgaagaaaccagagacaataaattatagaact
tttaaacctgaaaaagatggattattctgtgagagaatctttggaccgacaaaagattac
gaatgtgcttgtggaaaatataaaggaaagaaatacgaaggaacagtttgtgaaagatgt
ggtgtgagagttgagtcaaaagaagcccgaagaaagaggatggggcatatagaccttgta
gctcctgtggttcatatatggtatttaaagagcagccccagcatattgtcttctcttctt
tcagtaccggcaaaggaattagaaaacgtggtttattatggcggaaaaagaattattgaa
aaggtgcttatagtaaccgatccaaaaaatacagattttataaaaggttcgcttctttat
caaacagaatacgaaatatattctcagaaacttgattttgaagttatgcctggtgtgata
ataaagtcaccaagatcaccggttgttacagatatagatggggaagtaagaattagaaaa
gagaaaactcatacagatagagagataacatgggtcgatgtaagaaatatttccagatct
cctcatagagtttatacaggaatggttttaaatgtgaaaaatggcgataaaatagaacag
ggtgaagagttggtctctgaaatgaaaatagaaccaatttattctccttttgatggaaca
gtggaaattgatgaaatttctgagactattacaataaagccacttacaacaagcaaagaa
atgccactgacattttcactgccatacggtgtaaagccaacagtctctgatggtagtaaa
gtgaaaaaaggtgatcagttaaccaccggtacaatattaccggcagtcattgcctctgtt
tctggaattgttagctttggaaaagagctcaacgttcgtccgcgagaagatgggaagtat
gaagtgcttgctacaggaaatgtatacatagagaatgttgttgagggaaagagctatcca
ttgtttgaaggttcacttgtttatgtagaggatggtcaggaagtttcaaaaggagatata
atagctgatagattcctttttgaagatgaatatctgacacttgaagaatataaaattttt
gaagatcactatcctgcaatgtttaccgctgaaacagaagtggaaaatgatagaccaata
gttgttattactaagatagatgatgatgtttctctggaaactggtttgagcataggcgat
atcataacagatgaccaatatggagcttacagggtactttacggggaaaaaatagaagct
gagtctggagcagctgcggtgaagaaacttttacagaatattgatcttgagaaactaaaa
gttgaaatagaaagtgagttaaaaaagatttcaaaaagtagtggaagggcaaagaaactt
cttagaagattaaaaatagtcaaagatttgataaaaagtggagcacaacccgaatggatg
gtactcgaggctatccctgttgttccacctgacataaggccaatgattcaggtagagggt
ggaagatttgcaacaacggatcttaatgacctttacagaagggttatcaacagaaacaac
agattgaaaaaattgtatgaaatgaattctccagaaataattgttaaaaacgaaaagaga
atgcttcaagaagcagtggacagtcttttatataacggcagaatgggtaaagctgttaca
gatagaaatggcagacctttaaaatcgttaactgatcttgtaaaagggaaaaaaggaaga
tttagaagaaatcttcttggaaaacgtgttgattattccgggcgagctgttattgtcgtt
gggccacaccttaaaattcacgaatgtgggttaccgaaaaagatggctatggaattgttc
aaaccatttgtgcttgcagagcttataaatcgtgatgaagagtcgagtaaaacggcaaga
aaaatgaaaaaggcaataatagaaaaagaacttcctcaggcatgggaagtacttgaagag
gtaataaaaggacatccagtattattaaatagggccccaacgttacacagaatgtctata
caggcatttgaaccaaaacttatagaaggaaatgctatacaacttcaccctcttgtatgt
cctccgttcaacgcagacttcgatggggaccagatggcagtgcacgtacctctttctgca
gcagcacaggcagaagcgaagtttcttatgctttctcgttacaatataatatcacctgct
catggtaaaccaatttcaatgcctggaaaggatattgtggcaggagtatattacctgaca
atggtagataaagattacgaaacagtgaatccagaagatattaaatggaaattttcatct
atagatgaggctgagcttgcatacgaatttggatatataaaattgcatgaccctatactt
gtgaaagtggacgataaagttgttaaaacaacttatggaaggttaatatttgccaatatt
gttcctgaaaaatttagagattacaataagacatatggcaaaggtgctataaaagaactt
gtttataaaactttcaaaacatatggagttgacagaacagcggatcttcttgatgacata
aaagatctcggatttcactacgctactgtttctggattgactgtaagtataacagatttc
tatatatcgcctgaaagagaaaatattataaaaaacgcgcgcgagaggataaaaaaggtt
gaggctctttatgaacagggttttttgagcgatgaagaaagatacagagaaacgataaaa
atatgggctaaggctacggaagaagttcaggatgcgacttttgagtatcttggaaaagat
ccgtttaacccaatctttataatggtagattctggagcaagaggaaacaaggaccaatta
aaacagcttgctggtatgagaggattaatggcggatccatcgggaagaacaattgaaatt
cctattatttctaactttagagatggattatctgttcttgaattctttatcagcacccac
ggagctcgaaagggttcagctgatactgcattaagaacaagctcagcgggatacttgaca
aggagattggttgatgttgcgcaaagtgttgttattactacaacagattgtggaacatac
gacggcgttagagcaacgatacttaaaagtagtgatggtttaagagtagaaaagcttgag
gaatttctgtttggaagagttttggcaaaagaggtatacgatcctgaaactaacgaagtt
cttgaaaatccaaagacaggtcgcaaatatacgcgtgatacaatgcttgacgatgatgat
gccaggttccttggcaattatgcaaaaagaatacctgtagtaaaaagttatgaaatagat
ttacaacagccaatgattccagagaattatgcagaaatagtagaaggatttgtttcaaaa
gatggagtaagttatgaacagggttcagaattaaactgggaagttatcaaggcggcaaaa
gaagcaggaatcaaggcgttgaaaataaaagaatatcctgtggttggtaaagtatctgtt
gaggttgttttgtcaccaaaagatatgagacaattagttatagaagatgaattaatagat
tccactacggctaaaatactggaagaaaacaacgtagaatctgttgaagtgcgaccagat
ataattgtgagatcagtcctcacttgtgaagctgagcatggtgtgtgtgcaaagtgttat
ggaatggatctttccaatcacaagattattagcgttggtgaatctgtaggtattgttgct
gcacagtctataggagaacctggaacgcagcttaccatgagaactttccatactggaggt
atagctactgcagcagacattacgcagggtctcccacgtgcagaagaattgttcgaggcc
aggaaaaagctcaaagagccagaaggagttttctcagcagttaaaggttttataaaggat
atagttgaagatgaaacaggtcgcaaaaaggtttacgttgaagatgaagcgggagacatt
cacgagtatgagataccgaccaaagttaaagtcagtgtgaagaaagggcaaaaagtactg
cctggtcaatcgctgacaacaggtgctataagaccaagaaaaagtcttgatactcttagt
gtagatgcaactgctttgtaccttcttaaagaaattaaaaaggtgtatgttgaacagggt
gttgatattcatgataaacattttgaaataataattagacagatgcttgacaaagttgaa
ataacagaccctggagacacagatttcttaccaggtgatcttgtaagattgcaaacagtg
gtaagaataaataaggaaatacttactgaaaatgcacatgtagaaaataataaaaagcgt
gttgttggtaaagtgcttgcaaagcctcttataggcgaagatgagaatggagaaatagta
gaaattgcaccagaaggtgtggaagtaaccgaagaaatagtggaaaaagcggtgtcgctg
ggaataaaagatttaatagtaaaagatggagaagaggaaaaaacgatttatcagatactg
ccaaaagaacctatcaaatacagaagaagacttcttagaattacaaaagcatcattagaa
catgtaggctggttgagtgctgcgagcttccagcaaacgccgcaggtattgactgaggca
gctattgaaggagcaattgacgatttgcttggccttaaagaaaacgtcatagtaggtcag
ctcattccagcaggaacagggttagatatgtttgccaatgttcaaatagaagaaacacca
agaatggcaaaagaagaaaaagaaaaaatggcgtaa
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integrated database retrieval system
