Thermosipho ferrireducens: JYK00_02485
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Entry
JYK00_02485 CDS
T07656
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tfe
Thermosipho ferrireducens
Pathway
tfe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYK00_02485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfe03019
]
JYK00_02485
03009 Ribosome biogenesis [BR:
tfe03009
]
JYK00_02485
Enzymes [BR:
tfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JYK00_02485
Messenger RNA biogenesis [BR:
tfe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JYK00_02485
Ribosome biogenesis [BR:
tfe03009
]
Prokaryotic type
rRNA helicases
JYK00_02485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_7
Motif
Other DBs
NCBI-ProteinID:
QTA38411
LinkDB
All DBs
Position
complement(493608..495179)
Genome browser
AA seq
523 aa
AA seq
DB search
MNFEEFNLSDSVLSAIYKKGFEKPTYVQEKVIPLMLSKKGNIIAQSKTGTGKTASFGIPL
IELLKPKKYVQALILTPTRELSLQVAEEISSLKGKKRLKIFPVYGGQSINYQIQHLKRGV
DVVVGTPGRILDHINRKTLDISKVEYFVLDEADEMLNMGFIDDVERIMENASDDKKILLF
SATMPSRIISLAKKYMGTYEFVKATDNQLTVNLTEQIYIEVYESEKFEVLCRVIDATEEF
YGLVFCRTKLEVDEVSNRLIERGYDAEALHGDFSQYQRERVLKKFRTRKVNILIATDVAA
RGIDIGGLSHVINYSIPLNPEYYVHRIGRTGRAGKEGVAITFVTPKEYRELFRIKKFSNA
RIKKGEIPTIEEVLSAKLNKIKKFISNRNEVKDNKVYKKLTKELLSEYSTEEVVEGLLKY
ILRGSISEIFQDLSQNRKFSEKVRLFIARGKNSGMDKAKLVRFISERAGINDKIIRDVQL
YDKFSFITVPYREAEIILEAFKVRGRRSIVSKAREKSKSKFIN
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
gtgaattttgaagagtttaatttgagtgacagtgtgttgagtgcaatttacaaaaaaggt
tttgagaaaccaacctatgttcaggagaaagtgatacccttaatgctttcgaaaaaagga
aatataatagcccaatcgaaaacgggtacagggaagactgcttcatttggcataccacta
atcgaacttttgaaaccaaaaaagtatgttcaggctttaatattaactccaacaagagaa
ctgagtcttcaagtagcggaggagattagtagcttgaagggaaagaagcgattgaaaatt
tttccagtatatggcggtcagtcaataaattatcagattcagcatttaaagcgcggagtt
gatgtagttgtaggaacacctggtagaattcttgatcatatcaatagaaaaactctggat
atttcaaaagttgaatattttgttcttgatgaggctgatgagatgctgaatatggggttt
atagacgatgttgaaaggataatggagaacgcttcagatgataaaaagatacttttgttt
tctgcaacaatgccttcaaggataatttcacttgcaaaaaaatatatgggaacatatgaa
tttgtgaaggcgactgataaccagcttacggtaaatcttacggaacaaatatatatagaa
gtttatgaaagtgaaaaatttgaggttctttgcagggtaatagatgcaactgaagaattt
tatggtctggtgttctgtagaacaaagttagaagttgatgaagtgtcaaacaggttgata
gaaaggggctatgatgcagaagctcttcatggagatttttcccagtatcaacgagagaga
gttttaaaaaaatttagaacacgtaaagtgaatatactcattgcaacggatgtagcagca
aggggaatagatataggtgggctttctcatgtgattaattattctattccgttaaatcca
gagtattatgttcatcgaataggaagaacaggaagagcgggaaaggaaggggttgctata
acttttgttacaccaaaggagtacagagaattattcagaataaagaaattttccaacgcc
agaataaaaaaaggagaaataccaacgatagaagaagttttgtcggcgaagttaaataaa
atcaaaaagtttatttctaatcgtaatgaagtgaaagataacaaagtgtacaaaaaacta
acaaaagaattattaagtgagtattcaacagaagaagtggtagagggcttattaaaatat
attttaagaggttctatttctgaaatttttcaggatttatctcaaaacaggaaatttagc
gagaaagtacgattattcatcgctcgaggaaaaaatagcgggatggataaagcaaaatta
gtcaggtttatttctgaaagagcggggataaatgataaaataattcgtgatgtccagctt
tacgacaaattttcttttataacagttccgtatagagaagctgaaattatactggaagct
tttaaagttagagggcgtcgttcgattgtttcaaaagcaagagagaaatcaaaaagcaaa
tttataaattag
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