Thermosipho ferrireducens: JYK00_05360
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Entry
JYK00_05360 CDS
T07656
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tfe
Thermosipho ferrireducens
Pathway
tfe03410
Base excision repair
tfe03430
Mismatch repair
tfe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JYK00_05360 (recJ)
03430 Mismatch repair
JYK00_05360 (recJ)
03440 Homologous recombination
JYK00_05360 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfe03400
]
JYK00_05360 (recJ)
DNA repair and recombination proteins [BR:
tfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JYK00_05360 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JYK00_05360 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JYK00_05360 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Homeodomain
SWIRM-assoc_2
CCDC117
Motif
Other DBs
NCBI-ProteinID:
QTA37180
UniProt:
A0ABX7S628
LinkDB
All DBs
Position
complement(1075296..1078241)
Genome browser
AA seq
981 aa
AA seq
DB search
MRWKLRQFNKELVNELSKKLKIPYLTSQLLVTRGFNDPEKAWKFINPIKEDLRSPFLLKD
MSKAVEILIMARQKGLPVLVYGDYDVDGITGTATLVSFLSKHGWEVDYYIPNRLDEGYGI
QPSIVQSFYEKGFKVLLSVDCGITSFEAVELTKKLGMYAIITDHHSTKDVLPVADAVIDP
KRADDNYPFKDFAGVGVAYKLITALAKSLDIPEEDVDTLLDLVALGTIADMVELVDENRY
IVKEGLKKLNNTNRIGLIQLIKKLNLNYITSQDIGYRIAPKLNAAGRLYSAEDAFKLIMT
ENMSSAEQLAEILLGYNFTRQEIETKIYEEAVAQIESTDMKDAPVLVVYKEGWHAGVIGI
VATKLVQRYNKPALVISLENGIGRGSGRSIEGINILEILKNFSHHFEEFGGHPMAIGFSI
LENNIKPFIKELKDKLEEQLLKVTSSLTVDAILTVDEINEEVLEALRYLEPYGHGNPEPI
FLIRNSTVDRIRFFGNNGTNVRLTLRGKHKLIEGIGFGLKKQYHEIPAIQALLTSLDVAA
NIRENGVGPVLNVIDFKVSAASEEEYKDKYFIYSFTNNWRNQNSEDFDYYHSNEILQRFE
KVKKYTSFSKPFVLQTDPLTRNAFLIYLMEKSRTLIINPTNVDALHIYESLSRHCPKDLS
FVNSINTNYKKHVITNAIMILENVVNISDFDTVVLNEIQILPAISSEIFSRLISRTGKNV
IITSIYNFETNIPLYSEDRKINFGLEDRRNTKKSIEYDSNAVAYVFSNYHYVDKFYEKLM
KASHNPKDMVFYSPILEPFQKKAISTLVRKKRIKKLVCSTNTDGLPSMLQDGVEIKLYDF
PLTVKELIDAVAGSSYSILQLFYNKEDVNQRLNHLQKIFPSNEKLKTLFENITTIPSNEE
IQQLSVKYNIPEKVLRSVLKNLITEKTNTIEYAPEKILRLKEREIELPYFEKYTMMLLNA
NIKDIYKMIEERYLYDVYLQI
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
gtgagatggaaactacgacaatttaataaggagttggttaatgagctttctaaaaagctt
aagattccttatcttacttcacaactccttgtaacgcgaggattcaacgatccagaaaag
gcctggaaatttatcaatccaataaaagaggatttaaggtccccgtttttactcaaagat
atgtcaaaggctgttgaaattttgattatggcacgtcaaaaagggttacccgtgcttgtt
tatggagactatgacgttgacggaattactggaacagctactcttgtgagttttctttca
aaacatgggtgggaagtagattattatataccaaaccgtttagatgaaggttatggcatc
cagccttcaatcgtacagagcttttacgaaaaaggatttaaagttttattaagcgttgac
tgtggcatcacaagctttgaagcggttgaattaactaagaaactcggtatgtatgcaata
ataactgaccatcacagtaccaaggatgtactgccagttgctgatgctgtaattgatcca
aaaagagctgatgataattatccttttaaagattttgctggtgttggtgttgcttataaa
ctaattaccgcattggcaaaatctctggatattcccgaggaagatgtagatactttgctg
gatcttgtggccctggggaccatagcagacatggtagaacttgtagatgaaaaccgttac
attgtaaaagaaggtctgaaaaaattaaacaatacaaatagaataggtctaattcagtta
ataaaaaaattaaacttgaattacatcacaagccaggatataggttaccgtatagctccc
aagcttaatgcagcgggtcgtttatactcggctgaagatgcgtttaagttaattatgact
gaaaatatgtcttctgccgagcagctcgctgagatactcctgggatacaattttacccga
caggaaatagaaacaaaaatatacgaagaagcagttgctcaaattgaaagcactgatatg
aaagatgctcctgtcttagtagtttacaaagaaggatggcatgccggtgtaataggtatt
gtagccacaaaactcgttcaaagatataataaacctgctctggttatctctcttgaaaat
ggtataggaagaggatctggacgaagtatcgagggaattaacattttagaaatcttaaaa
aatttttctcaccatttcgaagaattcggtggtcatcctatggcaataggtttcagtatt
ttagaaaataatataaagcctttcatcaaagaacttaaagataaattagaagaacaactg
ctcaaagtaacttcatcacttactgttgatgctatactcacagttgatgaaataaacgaa
gaagttttagaagctttgagatatctggaaccttacgggcatggaaatcctgaacctata
tttttaataaggaattctacagtcgatcgtatcagattttttggcaacaatggaacaaac
gttagattaacacttagaggaaaacacaaattaatagaaggaataggctttggtttaaaa
aaacaatatcatgagattccagcaattcaagctcttttgacatccctggacgttgctgct
aatattcgtgaaaacggtgttgggccagttttaaacgtaatagactttaaagtttcagct
gcttcggaggaagagtacaaagataagtactttatatattctttcactaacaactggaga
aatcaaaattctgaagattttgattactaccattcaaatgaaattttacagagattcgag
aaagtaaaaaaatatacaagtttctcaaagccttttgtccttcaaactgatccacttact
cgaaacgcttttttaatatatcttatggaaaaaagtagaacattaataataaaccctacc
aatgttgatgctttacacatttacgaaagcctttcaagacattgtccaaaagacttgtct
ttcgtaaattccataaatacaaattataaaaaacatgttataacgaacgctattatgatt
ttagaaaacgtcgtaaatatttctgactttgacacagtggtacttaatgaaattcaaata
cttcctgctatttccagcgaaatattctccagactaatatccagaactggaaaaaatgtt
ataataacttctatttataattttgaaacaaatataccattgtattccgaggatagaaaa
atcaactttggtcttgaggatcgaaggaatacaaaaaaaagcatcgaatacgattcaaat
gctgtagcatatgttttttcaaactatcattatgtcgataaattttacgaaaaacttatg
aaagcttctcataatcctaaggatatggtcttttatagtcctatcttagaacctttccag
aaaaaagctatcagcactctggtgcgaaaaaaaaggataaaaaaattagtctgttctaca
aacacagatggtcttccttcgatgttacaagatggtgttgaaataaaactatatgacttc
ccactaactgtaaaagaattgatagacgcagtagccggttcttcttattctattcttcaa
cttttttacaataaagaagacgttaatcaaaggctcaatcatttacaaaagattttccca
agcaatgaaaaactcaaaactttgtttgaaaatataacaaccattccttcaaacgaagaa
attcaacaactttctgtaaaatataacattccagaaaaagttttaaggtccgtgttaaaa
aatctaataaccgaaaagacaaacacaatagaatatgcccctgaaaagattctcagatta
aaagagcgggagatagaattaccatattttgaaaaatacactatgatgctcctaaatgcc
aatataaaagacatttataaaatgatcgaagaaagatatctatacgatgtatatttgcaa
atttag
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