Thermosipho ferrireducens: JYK00_06910
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Entry
JYK00_06910 CDS
T07656
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
tfe
Thermosipho ferrireducens
Brite
KEGG Orthology (KO) [BR:
tfe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tfe03009
]
JYK00_06910 (rlmD)
Enzymes [BR:
tfe01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
JYK00_06910 (rlmD)
Ribosome biogenesis [BR:
tfe03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
JYK00_06910 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
RrnaAD
Cons_hypoth95
Methyltransf_25
TRAM
Methyltransf_15
TRM5-TYW2_MTfase
Methyltr_RsmB-F
TRM
Methyltransf_12
Methyltransf_11
TehB
PrmA
NodS
Ubie_methyltran
Methyltransf_4
PCMT
SAM_MT
DOT1
FtsJ
DUF7021
UPF0020
Motif
Other DBs
NCBI-ProteinID:
QTA37462
LinkDB
All DBs
Position
complement(1386466..1387809)
Genome browser
AA seq
447 aa
AA seq
DB search
MINNKEKIETVYIEKIAHGGQGLGKLPGGKIIFVDRGYPGELVEVKIVREKKDYAIGYAH
NILEKINERRSPACPYFGKCGGCQWMDINYEKQIEFKESIVKDQLNRIAKIPPEFVESIE
KSSHEFEYRLKMEYAFDYKNEVFLGLKEKNSNKVIPLKNCPISPKVFNRALTVVPKIVEE
LKIPVYKNKRGILKHLVMRYSPSEGTVMAIFVTKTENLPFDKLIATQLIKHIPGISSVIH
VMNSVDKIVLRGPYKVLKGEGVLSIEFDWEKFQIPPTAFFQNNYYITSKLIETITKRLEL
TGKEIVLDLYSGIGTFTMRLAALSKHVTAVENNRIAIKAGRANANINNLRNINFVIGDAE
KFLENNPEKYDVIVLDPPRTGAGKNVINKILQSSPQKIAYVSCDPSTLARDLKILLDSQK
YKLLFVKPFDMFPQTYHVESLALLKKK
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgataaataacaaagagaagatagaaactgtctatatagaaaaaatagctcatggcgga
cagggtctgggaaagcttccaggaggaaaaataatattcgttgatagaggatacccaggc
gaacttgtagaggtcaaaatagtaagagaaaaaaaagattacgctataggttatgctcac
aacattttagaaaaaataaatgaaagacgttctcccgcatgtccttattttggtaaatgc
ggtggttgtcagtggatggacataaattatgaaaaacaaattgaattcaaagaaagcata
gtaaaagatcaacttaatagaatcgctaaaattcctcccgaatttgtagaatcaatagaa
aaaagttcgcatgagtttgaatacagattgaaaatggagtatgcttttgattataaaaac
gaagtatttttgggtttgaaagaaaaaaattccaacaaagtcattcctttaaaaaattgt
cctatttctccaaaggttttcaatagagcactgacagttgtaccaaaaattgtggaagaa
ttaaaaatacctgtttataaaaacaaaagagggatattaaaacatcttgtgatgaggtat
tctccttctgaaggaactgttatggcaattttcgtaacaaaaactgaaaacctacctttc
gacaaattgatagcgacacagttaattaaacacataccaggaatatcatctgttatacat
gttatgaacagtgttgataaaatagtccttcgaggcccatacaaggttttaaagggcgaa
ggagtactttctatagaatttgactgggaaaaatttcaaatccctccaacagccttcttt
cagaataactattatataacatcaaaacttattgaaacaataactaaacgacttgaatta
actggtaaagaaattgttttagatctttatagcggaattggaacatttacaatgcgactt
gcagctttaagtaaacacgtcacagcagtagaaaataacagaatagctataaaagcagga
agagccaacgccaatataaacaatttaaggaatataaattttgtaatcggggatgctgaa
aaatttctggaaaataatccagaaaaatacgatgttatagtacttgatcccccacgaacc
ggtgcagggaaaaatgttataaataaaatactacaatcctctccacaaaagatagcctat
gtttcgtgtgatccctcaactttagcgcgagatctaaaaattctgttagattcacaaaaa
tataaactactttttgtaaaaccatttgatatgtttcctcaaacctatcacgtggaatct
ttagcactattaaaaaagaaataa
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