Thermosipho ferrireducens: JYK00_09675
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Entry
JYK00_09675 CDS
T07656
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
tfe
Thermosipho ferrireducens
Pathway
tfe03030
DNA replication
tfe03410
Base excision repair
tfe03420
Nucleotide excision repair
tfe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JYK00_09675 (polA)
03410 Base excision repair
JYK00_09675 (polA)
03420 Nucleotide excision repair
JYK00_09675 (polA)
03440 Homologous recombination
JYK00_09675 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tfe03032
]
JYK00_09675 (polA)
03400 DNA repair and recombination proteins [BR:
tfe03400
]
JYK00_09675 (polA)
Enzymes [BR:
tfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JYK00_09675 (polA)
DNA replication proteins [BR:
tfe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JYK00_09675 (polA)
DNA repair and recombination proteins [BR:
tfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
JYK00_09675 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JYK00_09675 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH_2
Motif
Other DBs
NCBI-ProteinID:
QTA37966
LinkDB
All DBs
Position
complement(1966177..1968864)
Genome browser
AA seq
895 aa
AA seq
DB search
MAKMFIFDGTGLVYRAFYAIDQSLRTTTGFPTNAVYGLTKMLIKFLNKHISSGKDACVFV
MDSKGGSKHRKELMEAYKANRPETPELLQKQIPYIEEIVEALGIKVIKLSGYEADDIIAT
ISKKSSSLFETVNIVTGDKDLLQLVSENVFVWRVGRGITDIKLYTRDTVFERYKVYPEQF
VDYLALVGDPIDNIPGVSGIGEKTAAKLLNKYGTIDNILNNVNLLTPKLKEKILNGLDDL
KLSKELATLIYDVPIEFKHEDFKYKGFNPSHLLEILKKYEFSSIIKELKLYESSSTFESN
YKIITNLEDLKKLEKEIDSIRTFSIDSETTSLDPFEARIVGISIATAEGKAYYIPVAHKK
GKNIDFDVLTAFLKRILESPDYNIVGQNLKYDYKIFKKYGIEPYFPHFDTMIGAYLLNPN
EKRFNLNELAMKFLGYKMISYEEVVDTNAPLFINDFSYVPVEEAARYSCEDADITYRLFR
ILSRNIYESHMDELLNNIEMPLINVLAEMELNGVYFNKNYLFKLSKNMESKLNNLKNKIF
EIAGEEFNVNSSKQVAYILFDKLKLPTSKKTAKGVFSTDAEVLVGLAENYEIARLLLEYR
KIQKLKSTYVDTIPNVINPFTGRVHTTFHQTGTSTGRLSSSEPNLQNLPSRTEEGREIRK
AIQPQENNWWILGADYSQIELRILAHMSEDVNLIRAFKEGMDVHSLTASRIFGVSEELIT
EKMRRIGKMVNFAIVYGVSPYGLSKRIGLDISETRKVINNYFKYYFGVFEYIQKMKNFAK
SNGYVETLLGRRREIPQITSSNANIRAEGERIAINTPIQGTAADIIKLAMINIYKELRRN
NMESKMILQVHDELVFEVPDKELEDMKELVKNEMENAVKLRVPLEVELYYGKEWE
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaagatgttcatatttgatggaacaggattggtttatagagcgttttatgccatt
gaccaatctcttcgtacaacgacagggtttccaacaaatgcggtgtacggtttaaccaaa
atgttgattaaatttctcaacaagcatatatcatcaggtaaagatgcctgtgtatttgta
atggattcaaaaggtgggagtaaacacagaaaagaactaatggaagcttataaagcaaat
agacctgaaacacctgagctgttgcaaaaacaaattccatacattgaagaaattgtcgag
gcgcttggaataaaggtaataaaactgtctggttatgaagccgatgatattatagcaact
atatctaaaaaatcttcaagtttatttgaaacggtaaatattgttactggagataaagat
ttattacagcttgtatcagaaaatgtgtttgtatggagagtgggtagaggaataacagat
ataaaattgtatacacgtgatactgtttttgaaaggtacaaagtatatcccgaacagttc
gttgattatcttgcgcttgttggagatccaatagataatatcccgggtgtttcggggata
ggtgaaaaaactgcggcgaaattacttaacaaatatggaactattgataatattttgaat
aatgtaaatctattaacaccaaaactaaaggaaaaaatattaaatggcctggatgatctc
aaacttagtaaggagcttgcaactcttatttatgatgtacccatagagtttaaacatgaa
gattttaaatataaaggctttaatccatctcatttacttgaaatccttaaaaagtacgaa
ttttcgagtatcataaaagaactgaaactatatgagtcttccagtacttttgagtccaat
tataaaataataactaatcttgaagatcttaaaaaattagaaaaagaaatagattcaatt
agaactttctcgatagacagcgaaacaacttcacttgatccttttgaagcaagaattgtg
ggtatatctatcgctacagctgaaggaaaagcctattacatacctgtggctcataaaaaa
ggtaaaaacatagattttgacgttttaactgcttttttgaaaagaattttggaatcacct
gattataatatagttgggcagaatttaaaatatgattacaaaattttcaaaaaatatggt
atagaaccttattttcctcattttgataccatgataggcgcttatcttttgaatccaaac
gaaaaacgatttaacttaaatgagttagctatgaagtttttaggttacaaaatgatatcg
tatgaagaggttgtcgatactaatgctccgctttttattaacgacttttcctatgtccct
gttgaagaggctgccaggtattcgtgtgaagatgctgatataacttatagattatttaga
atattaagtcgaaatatttatgaatctcatatggatgaattgttgaataatatagaaatg
cctctcatcaatgttctggctgagatggagctaaatggtgtttattttaataaaaactat
ctttttaaactctctaaaaatatggaaagtaagttaaataatttgaaaaataaaatattt
gaaattgctggcgaagaatttaatgtaaattcttcaaagcaggtagcttatatactcttt
gataaacttaaacttccaacttctaaaaaaacggctaaaggtgttttttccacagatgcg
gaagtactcgtaggactcgcagaaaattatgaaatagcaagattattacttgaataccga
aaaattcaaaaattaaaaagcacttatgttgatactataccaaatgttataaatccattt
acaggaagggtgcatacaacttttcatcaaacagggacttctactggccggctaagcagt
tcagaaccaaatttgcagaatttaccttcaagaactgaagaaggtcgtgaaattcgaaaa
gctatacaacctcaagaaaataattggtggattcttggagcagactattctcaaatagag
ttgagaattcttgctcatatgagcgaagatgtcaatttgataagagcatttaaagaaggt
atggatgtccatagtttaacggcttcgaggatatttggtgtttcagaagaactaattaca
gaaaagatgaggcggataggtaaaatggttaactttgctatcgtttatggtgtatcccct
tatggtttatctaaaagaataggcctcgatatttctgaaaccagaaaagttatcaacaat
tatttcaaatactattttggagtttttgaatacattcaaaaaatgaaaaattttgctaaa
tccaatggttatgtagaaactctccttggtagaaggcgagagattcctcaaataacgtcg
tcaaacgcgaatataagagctgaaggagaacgtatagctataaatacaccaattcaggga
accgcggcagatattataaaactcgctatgataaatatatataaagaattaagaagaaac
aatatggaaagtaaaatgattttgcaggtgcatgacgaattagtttttgaagtaccagac
aaagaattagaagacatgaaagaacttgtaaaaaatgaaatggaaaacgccgtaaaattg
agggtaccattggaagtggaactttattatggaaaagagtgggaataa
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