Tenacibaculum finnmarkense: PJJ26_00780
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Entry
PJJ26_00780 CDS
T08880
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tfi
Tenacibaculum finnmarkense
Pathway
tfi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PJJ26_00780 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfi03400
]
PJJ26_00780 (mfd)
Enzymes [BR:
tfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PJJ26_00780 (mfd)
DNA repair and recombination proteins [BR:
tfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PJJ26_00780 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
TerB_C
CdiI_ImmP
Motif
Other DBs
NCBI-ProteinID:
WCC42429
LinkDB
All DBs
Position
25003..28335
Genome browser
AA seq
1110 aa
AA seq
DB search
MSKQLIVNHYQQSDTVKQIVKELQQEQNHFQISNLVGSSLSFVISETFKKAEKPYLLIFN
DKEEAAYYLNDLEQLLGDKNVLFYPGSYRRPYQIEETDNANVLLRSEVLNRINSRRKPAI
IVTYPTALFEKVVTKKELDKNTLKITVGENISPDFVNEVLFEYQFNRVDFVTEPGDFSVR
GGIIDVFSFSNDEPYRMEFFGDEVESIRTFDVETQLSKEKQQKVSIMPNVENKGLQENRE
SFLKYISAKTAIFVKDIATITTNLDTFFKKATASFDELSTEIKHSKPSELFCDAALIQEE
LQKFTRVNMGKAVIKNITNVVFDTHPQPSFNKKFDLLIQNFNEFSAKGFTNYIFCSNDKQ
AQRFHDIFDDNDTEVSYETIVFPLYQGFVDIQNKIVCYTDHQIFERYYKFRLKNGYEKKQ
SITLQELTRLEIGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLIYGDRDILYVSIHSLH
KISKFNGKDGKPPKIYKLGSGAWKKVKQKTKARVKHIAFNLIQLYAKRKLQKGYAFAPDT
HMQHELEASFIYEDTPDQFTSTQDVKTDMEKPQPMDRLVCGDVGFGKTEVAIRAAFKAVD
NGKQVAILVPTTILAFQHFKTFSERLKDFPVTVDYLNRFRTVKQRNTVLEGVANGSVDIV
IGTHQLTNKKLQFKNLGLLVIDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSL
MAARDLSVIKTAPPNRHPIETNVIRFSEETIRDAISYEISRGGQVFFIHNRIENIKEVAG
LIQRLVPSAKIGIGHGQMEGKKLEELMLAFMNGEFDVLVSTTIIESGLDVPNANTIFINN
ANNFGLSDLHQMRGRVGRSNKKAFCYFITPAYHMMTTDAKKRIEALELFSELGSGLNIAM
KDLEIRGAGDLLGGEQSGFINDIGFDTYQKILQEAIEELKENEFKELYPTDENTPKEYVK
DVQIETGFEILIPDAYVNSVTERLSLYNDLGKLTKEEELLTFESEIVDRFGEYPAEVQDL
LDSVRIKWLAKELGLEKIILKQKRLLGYFIADQQSKFYETDGFTRMLQYVQENPKSCVMK
QKETKNGLRLLVTFIRIDSVKTALNLLREI
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaacaattgattgtaaaccattaccaacaatctgataccgtcaaacagattgtt
aaagagcttcaacaagaacaaaaccactttcaaatatcgaatttggttggttcttcgttg
tcttttgttatttctgaaacctttaaaaaagccgaaaaaccttacttattaatttttaat
gataaggaagaagccgcctattatttaaacgatttagagcaattattaggcgataaaaat
gtgttgttttatccaggttcgtatcgccgaccgtatcagattgaagaaactgataatgct
aatgttttattgcgttcagaggttttaaatcggattaattcgagaagaaaacctgcaatt
attgtaacgtatccgacggctttatttgaaaaagtagtcactaaaaaagaacttgataaa
aacactttgaaaattacagttggagaaaatatatctcccgattttgtaaacgaagtattg
tttgaatatcagtttaatcgtgttgattttgttactgaacctggtgatttttcagttcgt
ggtggaattattgatgtgttttcattttcgaacgatgaaccttatcgaatggagtttttt
ggcgatgaagtagaaagtatccgaacttttgatgtggaaacgcagttatcaaaagaaaaa
caacagaaagtaagtattatgcctaatgttgaaaacaaagggctacaagaaaatagagaa
agttttttaaaatatatatcggctaaaacagcaatttttgtaaaagatatagctacaatt
acaacaaatttagatacgttttttaaaaaagcaactgcttccttcgatgaattatcaaca
gaaataaaacattcaaaaccatcggagttattttgtgatgctgctttaattcaagaagaa
ttacaaaaatttacgagggtaaatatggggaaggctgttatcaaaaatataacaaatgtt
gtttttgatacccatccgcaaccttcttttaataaaaaattcgatttattaattcagaat
tttaacgaattttcagcaaaaggatttaccaattatattttttgctctaatgataaacaa
gctcagcgttttcatgatatttttgatgataacgacacggaagtatcctatgaaaccatt
gtttttcctttgtatcaaggatttgtagatattcaaaataaaattgtttgttatactgac
catcaaatatttgagcgttattataaatttcgcttaaaaaatggctatgaaaaaaagcaa
tccatcactttacaagaacttaccagattagaaattggcgattatgtaacacatatcgat
catggaattggaaaatttggagggcttcaaaaaattgatgtagaaggaaaaaaacaagaa
gcaattaaattaatttatggcgatagagatattttatatgtaagtattcactcgttacat
aaaatttcaaagtttaacggaaaagacggaaaaccgcctaaaatatataaattaggttcg
ggtgcttggaaaaaagtaaagcagaaaaccaaggctcgagtgaaacatattgcgtttaat
ttaattcaattatacgctaaaagaaaattgcaaaaaggctacgcttttgcgcctgatacg
cacatgcaacacgagttggaagctagttttatttatgaagatacacccgatcagtttaca
tcaactcaagatgtaaaaaccgacatggaaaaaccgcaacccatggataggttagtttgt
ggtgatgttggttttggtaaaacagaagtcgctattcgtgctgcttttaaagctgtcgat
aacggaaaacaagtagcaattttagtgcctactactattttagcttttcaacattttaaa
actttttcggagcgtttaaaagattttcctgttacggttgattatttaaatcgttttaga
acggtaaaacaacgaaatactgttttagaaggtgttgcaaatggaagtgtagatattgta
atcggaacgcatcaattaaccaataaaaaattgcaattcaaaaatttaggattgttagtt
attgatgaagaacaaaagtttggagttgctgtaaaagacaagttaaaaactatcaaagaa
aatgtagatacgctaacattaacagctacgccaataccaagaaccctacaatttagtttg
atggcagcgagagatttatcagtcataaaaacagcgccaccaaatcgtcatcctattgaa
accaatgtcatccgctttagcgaagaaaccattagagatgcaatttcttatgaaatttct
cgtggaggacaggtcttttttatccataatagaatcgaaaatattaaagaagtagctggt
ttaattcaacgtttagttcctagtgctaaaatcggtatcggtcatgggcaaatggaaggg
aagaagctagaagaattaatgcttgcctttatgaatggtgaatttgatgtattggtgtca
accactattattgaaagcggtttagacgtgccaaatgcgaatactatttttatcaacaat
gcgaataacttcggattgtcagacctgcaccaaatgcgaggtcgtgtagggcgttcgaat
aaaaaagcattctgttattttattacgccagcctatcatatgatgactacagatgcgaag
aaacgtatcgaagctttagagttattttcagaattaggaagtggtttaaatatcgccatg
aaagatttagaaattcgtggagctggagatttattaggaggtgaacaaagtggatttatc
aatgatattggctttgatacttatcagaaaatattacaagaagctattgaagaactcaaa
gaaaatgagtttaaagaattatatcctacggatgaaaatacgccgaaagaatatgtaaaa
gatgtacaaattgaaacaggttttgaaattcttattcctgatgcttatgtaaattcagta
actgaaagattaagtttatataatgatttagggaaattaacaaaagaagaagagttatta
acatttgaaagcgaaattgttgataggtttggcgaatatccagcagaagttcaagattta
ttagacagcgttcgtataaaatggcttgcgaaagaattagggcttgaaaaaattatatta
aaacaaaaacgtttattaggctattttatagctgaccagcaaagtaaattttatgaaact
gatggatttacaagaatgttgcaatatgtacaggaaaatccaaaaagttgtgtaatgaaa
cagaaagaaactaaaaatggcttacgattattagttacttttattcgaattgattcagta
aaaacggctttaaacttgttgcgagaaatataa
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