Tenacibaculum finnmarkense: PJJ26_06560
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Entry
PJJ26_06560 CDS
T08880
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tfi
Tenacibaculum finnmarkense
Pathway
tfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PJJ26_06560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfi03019
]
PJJ26_06560
03009 Ribosome biogenesis [BR:
tfi03009
]
PJJ26_06560
Enzymes [BR:
tfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PJJ26_06560
Messenger RNA biogenesis [BR:
tfi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PJJ26_06560
Ribosome biogenesis [BR:
tfi03009
]
Prokaryotic type
rRNA helicases
PJJ26_06560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
RecG_N
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
WCC43469
LinkDB
All DBs
Position
1368522..1370354
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AA seq
610 aa
AA seq
DB search
MSTFLDLGLKEPINKALTDLGYEKPTVIQEKAIPQIISSTDDLKAFAQTGTGKTAAFSLP
IIEQIDSSDKNTQAIILSPTRELAVQIGNNIKDFAKYIPDLKVVTVYGGSNIEEQIRGLK
RGAQIVVGTPGRTVDLINRRALRLGNVKWLVLDEADEMLNMGFKDELDKVLEATPDTKQT
LLFSATFPREVEAIARNYMTNPVEITSGEKNQGSDNVTHEYYVVNERTRYQALKRIADVN
TNIYAIIFCRTRRETQEVANNLIKDGYSADALHGDLSQQQRDSVMGKFRKKTIQILVATD
VAARGLDVTELTHVINHKLPDQIENYNHRSGRTGRAGNKGISAVLVNNKEKGRLRSIERI
IKKKFEAKKVPTGKEICQNQLMHLIEKVKATEVNNEQIEEFLPSIYEKLEDLTREELIQK
FVSLEFNKFLTYYNKSDDLNDISNKDSSRARATDENMTRFFINLGRKDKLNPATLIGLIN
DQKIADKIEIGAIDILDTFSFFEIDKNFEKETLEAFSANGADFNGRSVNIEITKSNRGGG
GGRKPRGGGGFGARRRSGGSDRAPRDRGSRDRAPRGDRDSRRRSDSGSSSPRRSSGDGAS
SGFGRRRNRD
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacatttttagatttaggcttaaaagagccaataaacaaagcattaacagattta
ggttacgaaaaaccaactgtaattcaagagaaagcaattcctcaaattatttcatctact
gatgatttaaaagcttttgctcaaacaggaactggtaaaacagctgcttttagtttacct
attattgaacaaatagatagttcagacaaaaacactcaagctatcattttatctcctact
cgtgaacttgctgttcagataggaaataatattaaagatttcgctaaatacataccagac
ttaaaagtggtaacagtatatggtggttctaatattgaagaacaaattagaggcttaaaa
agaggtgctcaaattgttgttggtactccaggaagaacagtcgatttaataaatcgtaga
gccttacgtttaggaaacgtaaaatggttagttttagatgaggctgatgaaatgcttaac
atggggttcaaagatgagcttgataaagtattagaagcaactcctgacaccaaacaaacg
ttattattttcggcaaccttccctagagaagttgaagcaattgctagaaactatatgact
aaccctgttgaaattacttcaggagaaaaaaatcaaggttctgacaacgttactcacgaa
tactacgtggtaaacgaaagaactcgttaccaagcgttaaaaagaattgcagatgtaaat
actaatatttacgcaattattttctgtagaacacgtcgtgaaactcaagaagtagcaaac
aatcttattaaagatggttatagcgcagatgcgttacatggtgatttatctcaacaacaa
cgtgatagcgttatggggaaattccgtaagaaaactatccaaattttagttgcaactgat
gttgctgctcgtggattagatgttaccgaattaacacacgttattaaccacaaattacca
gaccaaattgaaaactacaatcaccgtagtggaagaactggtagagctggtaacaaaggt
atttctgctgttttagttaacaataaagaaaaaggtagattacgttctattgagcgtatt
atcaaaaagaaattcgaagctaaaaaagtacctactggaaaagaaatttgccagaatcaa
ttaatgcacttaattgaaaaggtaaaagctacagaggttaacaacgaacaaattgaagag
tttttacctagtatctatgaaaaattagaggacttaactagagaagaattaattcaaaaa
ttcgtttcattagaattcaacaaattcttaacctactataacaaatctgacgatttaaac
gacatctctaataaagatagttcaagagctagagcgacggacgaaaacatgactcgtttc
tttatcaacttaggtagaaaagataaattaaatcctgctacattaattggattaattaac
gaccaaaaaattgctgataaaattgaaatcggagcgattgatattttagatactttttct
ttctttgaaatagataaaaatttcgaaaaagaaactttagaagcgtttagtgctaacgga
gctgattttaacggacgttctgtaaatattgaaattaccaaatctaatcgcggtggcggt
ggaggaagaaaacctcgtggtggcggtggattcggcgcaagacgaagaagcggtggttct
gatagagctccaagagatagaggttctagagatagagctccaagaggagatagagattca
agaagacgtagtgatagcggttcttcttcaccaagaagaagtagcggtgacggtgcatct
tcaggttttggaagaagacgtaacagagattaa
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