Tenacibaculum finnmarkense: PJJ26_08550
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Entry
PJJ26_08550 CDS
T08880
Symbol
ung
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
tfi
Tenacibaculum finnmarkense
Pathway
tfi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PJJ26_08550 (ung)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfi03400
]
PJJ26_08550 (ung)
Enzymes [BR:
tfi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
PJJ26_08550 (ung)
DNA repair and recombination proteins [BR:
tfi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PJJ26_08550 (ung)
Prokaryotic type
PJJ26_08550 (ung)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
WCC41535
LinkDB
All DBs
Position
complement(1857187..1857852)
Genome browser
AA seq
221 aa
AA seq
DB search
MNDTILPIDWQNILKPEFEKTYFKDLSNFVDKEFTENTCYPKKENIFKAFNDCSFDALKV
VIIGQDPYHGIGQGNGLCFSVNQGIKHPPSLVNIFKELATDLQVSTPVSGDLSHWATQGV
LLLNATLTVREGEAGSHQKQGWEQFTDAVIQKISEEKQDVVFLLWGKFAEKKGSIINTEK
HTIFKAPHPSPLGAWRGWFGSKHFSKTNTFLKSVNQTPIKW
NT seq
666 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatacaatactacccatcgattggcaaaatattttaaagccagaattcgaaaaa
acatattttaaagatttatctaattttgttgataaagagtttactgaaaatacttgttat
cctaaaaaagaaaatatatttaaagcttttaatgattgttcttttgatgctttaaaagtg
gtaattattgggcaagatccatatcatggaatagggcaggggaatggtttgtgtttttcg
gtaaatcaaggaataaagcatccgccatcattggtaaatatttttaaagaactcgctaca
gatttgcaagtatcaacgcctgtttctggcgatttatcgcattgggcaactcaaggagtt
ttgttgttaaacgctacattaaccgttagagaaggcgaggcagggagccatcaaaaacaa
ggttgggaacaatttaccgatgctgttattcaaaaaatatccgaagaaaaacaagatgtt
gtgtttttgctttgggggaaatttgccgaaaagaaaggcagtattataaatacagaaaaa
catactatttttaaagcaccacatccatctcctttaggagcttggcgaggttggtttgga
agtaaacacttttcaaaaaccaatacatttttgaaaagtgtaaaccaaacacctataaaa
tggtag
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