Tenacibaculum finnmarkense: PJJ26_10030
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Entry
PJJ26_10030 CDS
T08880
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tfi
Tenacibaculum finnmarkense
Pathway
tfi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tfi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PJJ26_10030 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfi03021
]
PJJ26_10030 (rpoC)
03400 DNA repair and recombination proteins [BR:
tfi03400
]
PJJ26_10030 (rpoC)
Enzymes [BR:
tfi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PJJ26_10030 (rpoC)
Transcription machinery [BR:
tfi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PJJ26_10030 (rpoC)
DNA repair and recombination proteins [BR:
tfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PJJ26_10030 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
WCC41803
LinkDB
All DBs
Position
complement(2196326..2200597)
Genome browser
AA seq
1423 aa
AA seq
DB search
MARKNEKYTVKKFNKISIGLASPESILEASRGEVLKPETINYRTHKPERDGLFCERIFDP
IKDYECACGKYKRIRYKGIICDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKM
GYLLGLPSKKLDMIIYYERYVVIQAGDAKTAEGESLNKMDFLTEEEYLDILDTLPQENMY
LDDTDPTKFIAKMGAECLIDLLERIDLDSLSFELRHKANTETSKQRKNEALKRLNVVEAF
RDSQKNRENNPEWMIMKAVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELRLFECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDR
KEPVVWDILENVIKGHPVLLNRAPTLHRLGIQSFQPKLIEGKAIRLHPLACSAFNADFDG
DQMAVHLPLVPEAILEAQILMLGSHNILNPANGAPVTVPSQDMVLGLYYMTKERKSTPEV
LIKGEGLTFYSPEEVIIALNEERVDLNAGIKVRTADVVDGEHITRIVATTVGRVLFNEKV
PKEAGYINEVLTKKSLRGIIGDILKVTNIPAVGDFLDEIKNMGYKYAFEGGLSFSLGDII
IPEEKEGMIAEANKEVDVIVSNYNMGMLTNKERYNQVIDIWGSANNRLTELSMKRLREDQ
QGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSIL
EYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNEVDCGTLRGLEVAPLKKNDE
IVESLSDRITGRTSLNDVYAPNSDDIIVASGELITSKLANTIQASGIDKVEVRSALTCES
ERGICEKCYGQSLSTGKKVQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGNISEENKL
IAKYEGNVKIEDLRTVNGKDKDGNEIEIVISRTAEIKIIDKKTEIVLSTNIIPYGSIIFN
KDMKTIKKGDAVCQWDPFNGVIVSEFGGRVKFDNLEQGINYSVEVDEQTGFQEKVMIDSK
NKKIIASLIIEDADGNALRSYSLPVGAHLMISDGDKVETGHTLVKIPRKSGKAGDITGGL
PRVTELFEARNPSNPAVIAQIDGVVSFGKIKRGNREIIIESKTGDITKYLVKLSNQILVQ
ENDFIKAGMPLSDGATTPIDILNIQGPSAVQQYLVNEIQEVYRLQGVKINDKHFEVVVRQ
MMRKVRIIDSGDTLLLENQLIHKNDFIKDNDAIYGMKVVEDAGDSENLQAGQIVSARQLR
DENSILRRADKNLVAAREAKPATAEQILQGITRASLQTKSFISAASFQETTKVLNEAAVN
GKIDTLEGLKENVIVGKRIPAGTGMRSYDRQIVEPREEMEENL
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaagaacgaaaaatacactgttaaaaagtttaacaaaatttcaattggttta
gcatctccggagtctattttagaggcatctagaggtgaggttttaaaaccagaaactata
aattaccgtacacataaaccagaaagagatgggttgttttgtgagcgtatattcgatcct
ataaaggactatgagtgtgcctgtggtaaatacaaaagaatccgttataaaggaatcatt
tgtgaccgatgtggggttgaagttaccgagaaaaaggtacgtagagatagagtaggtcac
attaatttagttgtaccagtagcacatatttggtattttagatcattgcctaacaaaatg
ggataccttttagggttgccatctaaaaagttagacatgattatttactacgaacgttac
gtagtaattcaagcaggtgatgctaaaactgctgaaggagagtcattgaataaaatggac
ttcttaacagaagaagagtatttagatatcttagatacacttccacaagaaaacatgtat
ttagatgatacagatcctactaagtttatcgctaaaatgggagctgaatgtttaatcgat
ttattagaaagaattgatttagactctttatcatttgaattacgtcataaagcaaatact
gaaacttctaagcaacgtaaaaacgaagcattaaagcgtttaaatgttgttgaagctttt
agagattctcagaaaaatagagagaacaatcctgagtggatgattatgaaggctgtacca
gttataccgccagaattacgtcctttagtgccattagatggaggtcgttttgctacttca
gatttaaacgatttataccgtcgtgtaattatccgtaataatcgtttaaaacgattaatg
gaaattaaagcacctgaggttattttacgtaatgaaaaacgtatgttacaagaatcagta
gattctttatttgataacacacgtaaatcatcagcagtaaaaacagaatctaacagaccg
ttaaaatcgttatctgatagtttgaaagggaagcaaggtcgtttccgtcaaaacttacta
ggtaagcgtgttgattattctgcacgttcggtaattgttgttggaccagaattaagatta
tttgaatgtggattgccaaaagatatggcagcagaattatacaaacctttcgttattcgt
aagttaatagaaagaggaattgtaaaaactgtaaaatctgcaaagaaaattatagataga
aaagagccagttgtttgggatatcttagaaaatgtaattaaaggacatccagttttatta
aaccgtgcacctacattacaccgtttaggtattcaatcttttcaaccaaaattaattgaa
ggaaaagcgattcgtttacatccattagcatgttcggcatttaatgccgattttgatgga
gatcaaatggctgttcacttaccattagtgcctgaagctattttagaagctcagatttta
atgttaggttctcacaatattttaaaccctgcaaatggagcaccagtaacggtaccatct
caggatatggtattgggtctttattatatgactaaagaaagaaaatctacacctgaagtg
cttattaaaggtgaaggattaactttttattctccagaagaggttattatcgccttaaat
gaagaaagagtagacttaaacgcaggtataaaagttcgtacagcagatgttgtagatggc
gaacatataactagaattgtagcaactacggttggtagagttttatttaatgaaaaagta
ccaaaagaagctggatatattaatgaggttttaactaaaaaatcattaagaggtattatt
ggtgatattttaaaagtaactaatattcctgctgttggagatttcttagatgaaattaaa
aatatggggtataaatacgcctttgaaggtggtttatctttctcattaggagatattatt
attcctgaagaaaaggaaggaatgattgctgaagctaataaagaggtggacgtaattgta
tctaactataacatgggaatgttaactaacaaagaacgttataatcaggtaattgatatt
tgggggtctgcaaataacagattaacagaattatctatgaagcgtttacgagaagatcag
caagggtttaactcggtatttatgatgcttgattctggtgcaaggggttctaaagaacaa
attcgtcagttaacaggtatgcgtggattaatggcaaaacctaaaaaatcaaccgctgga
ggtggagaaattattgaaaatccaattctttctaactttaaggaaggattatcaatttta
gaatactttatctctactcacggtgctcgtaaaggtttagcggatacggctcttaaaaca
gccgatgcaggttacttaactcgtcgtttagtagatgtatcacaagatgtaattgtaaac
gaagttgattgtggaactttaagagggttagaagttgcccctttaaagaaaaatgatgaa
atcgttgaatcattatctgatagaattacagggcgtacatctttaaatgatgtatatgca
ccaaattctgatgatattatcgttgcttctggtgaattaattacatcaaaattagcaaat
acaattcaagcaagcggtattgataaagtagaagttcgttcggcattaacatgtgaatct
gaaagaggaatttgtgaaaaatgttacggacaatcattatcaacaggtaaaaaagttcaa
agaggtgaagcagttggtgtaattgcagcacaatctattggagagcctggtacacagtta
acattacgtactttccacgttggaggggtagcaggaaacatttctgaagagaataagttg
attgcaaaatatgaaggtaatgttaaaattgaagatttacgtactgtaaatggtaaagat
aaagacggaaatgaaatagaaatagttatttcacgtactgccgaaatcaaaatcattgac
aaaaagacagaaatcgtattaagtacaaacattattccttatggttcaattatctttaat
aaagatatgaaaaccattaaaaaaggagatgctgtatgtcagtgggatccatttaacggg
gttatcgtatctgaatttggaggacgtgtgaagtttgataacttagaacaaggtattaat
tactctgttgaagttgatgagcaaactggtttccaagagaaagttatgattgactctaaa
aacaaaaaaatcattgcttcattaattattgaagatgctgatggtaatgcgttacgttcg
tatagtttaccagtaggtgctcacttaatgattagcgatggtgataaagttgaaacaggt
catactttagtgaaaattccacgtaagtctggtaaagcaggcgatattacaggaggttta
ccacgtgtaacagaattatttgaagcacgtaacccatctaatccagcagtaattgctcag
attgacggtgtggtatctttcggtaaaattaagcgaggaaatcgtgaaattattattgaa
tctaaaacaggagatattactaagtatttagtaaaattatcaaaccaaattttagttcaa
gagaacgattttattaaagcaggtatgcctttatctgatggagcgacaacgcctatcgat
attttaaatattcaaggaccttcagcggtacaacaatatttagtaaacgaaattcaagaa
gtatatcgtttacagggtgtaaaaattaatgacaagcatttcgaagtagtagtacgtcaa
atgatgcgtaaagttagaattattgattctggagataccttattactagaaaatcagtta
attcataagaatgactttatcaaagacaacgatgctatctacggaatgaaagttgttgaa
gatgcaggagattctgaaaatttacaagcaggacagattgtttcggcacgtcaattaaga
gatgaaaattctattttacgtagagcagataaaaatttagtagccgctcgtgaagcgaaa
ccagcaacagctgaacaaattttacaagggattactagagcttcgttacaaacgaaatca
tttatatcggcagcgtcgttccaggaaactactaaagtattaaacgaagccgcagtaaac
ggtaaaattgataccttagaaggattaaaagaaaatgtaattgtaggtaaacgtatacca
gcaggtacaggaatgagatcttacgatcgtcagattgtagagcctagagaagaaatggaa
gaaaatttataa
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