Tenacibaculum finnmarkense: PJJ26_10465
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Entry
PJJ26_10465 CDS
T08880
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tfi
Tenacibaculum finnmarkense
Pathway
tfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PJJ26_10465 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfi03019
]
PJJ26_10465 (recQ)
03400 DNA repair and recombination proteins [BR:
tfi03400
]
PJJ26_10465 (recQ)
Enzymes [BR:
tfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PJJ26_10465 (recQ)
Messenger RNA biogenesis [BR:
tfi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PJJ26_10465 (recQ)
DNA repair and recombination proteins [BR:
tfi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PJJ26_10465 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Peripla_BP_4
DHquinase_II
zf-CXXC
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
WCC41877
LinkDB
All DBs
Position
complement(2286530..2288644)
Genome browser
AA seq
704 aa
AA seq
DB search
MIQLTEQDLLVKLKENFGYDSFRLEQKTIIENVLAKKDTLVIMPTGGGKSICFQLPSLFF
DGITLVISPLIALMKDQVDSLKANGITATYYNSSQSSEEQEAVFDAIINKKVKLIYVAPE
SLSLLQNVLNEKYISCIAIDEAHCISSWGHDFRPSYKQLSFLKKTLPNTPIIALTATADK
ATQEDILTQLSVPNATKYVSSFNRENISLEVRPANDRVQKILKFIKQKPNDSGIIYCLSR
KATEQLASKLKINNINAKAYHAGLTFEERAKNQEDFIKDDVQIICATVAFGMGIDKSNVR
WVIHYNMPKNIEGYYQEIGRAGRDGLPAQALLFHSYADVIQLRQFIVNSSNQEVETAKLD
RMKQFSEATVCRRKILLSYFGELIEKNCGNCDVCKNPVQFFDGTIIAQKALSAIYRLREK
EGMGTVIDVLRGAKNANVFDKNYQTLKTYGIGNDISWQHWQHYIVQLINQGYCRIAFHLK
NSLQLTEFSKKVLFDGQKVQLTTPVEFKKEEKTPGVKGKKSTTKTATGSLFEALKKLRYR
ISKEEDIPAYLVFSDATLRALENERPQTDSAFLAISGVGNRKLEVYGGEFMDEIKKFIKD
KKQGKKDTTLETYKLYKEGFTIDEIAEKRSLKAQTIFSHLSKLYLEGKEIDLQKFITADT
VKLIANAKKVLKNEPTLKPYFEFLGEKVPYEQIRIGLSILQKNS
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgatacagctaacagaacaagacttactcgtaaaattaaaagaaaattttggatatgac
agttttcgattagagcaaaaaacaattattgaaaatgttttagctaaaaaagatacgctg
gtaattatgccaacaggaggtgggaaatctatttgttttcagttaccatccttatttttt
gatggaattaccttggttatttcgcccttaattgcgttaatgaaagaccaggttgatagc
ctaaaagctaatggaattacggcaacttattataatagtagtcaatcatcggaagaacaa
gaggcggtttttgatgctattattaacaaaaaagtaaagcttatttatgtagctccagag
agtttgtcattgcttcaaaatgtattaaatgaaaaatatataagttgcattgctattgat
gaagcgcattgtatttcttcttgggggcatgattttagaccgtcttataagcagttgtct
ttcttgaaaaaaaccttgccaaatacaccaattatcgccctaacggcaactgctgataaa
gcgactcaggaagatattttaacgcaattatcagtgccaaatgcgactaaatatgtaagc
tcttttaatcgagaaaatatcagtttagaggtgcgcccggcaaatgatagggtgcagaaa
atacttaaatttatcaagcaaaaacccaatgattcggggattatttattgtttaagcaga
aaggctacagagcaattagctagtaaattaaagataaataatatcaatgcaaaagcatat
catgcaggtttaacttttgaagaacgtgcaaaaaatcaggaagattttattaaagatgat
gtacaaattatttgtgcaacggtcgcctttggaatgggaattgacaaatcgaatgtgcgt
tgggtaattcattataatatgcccaaaaatattgaaggatattatcaagaaataggacgt
gcaggaagagatggtttgccagctcaagccttgctttttcatagttatgccgatgtaatt
cagctgcgtcaatttattgtaaatagtagcaatcaggaagtggaaacggcaaagttagac
cgcatgaagcagttttcggaagcaacggtttgccgacgaaaaattttactgagttatttt
ggcgaattgattgaaaaaaattgtggaaattgtgatgtttgtaaaaatccagtacagttt
tttgacggaactattattgctcaaaaagcgctttcggcaatttacagattgcgagaaaaa
gaaggaatgggaactgtaattgacgtgcttcgaggggcaaaaaatgccaatgtttttgat
aaaaattatcaaactttaaaaacctatggcatcggaaatgatatttcatggcagcattgg
caacattatattgttcagttgataaatcaaggatattgccgaattgcttttcacttaaag
aatagcttacagttaacagaattttcaaaaaaagtactttttgatggtcaaaaagtgcaa
ttaacaacgcctgtcgaatttaagaaagaggaaaaaacaccaggagtaaaaggtaaaaaa
tcaactacaaaaacagctacaggcagcttgtttgaagcgttaaaaaaattgcgttatcgc
atttcaaaagaagaagatattcctgcatacttagtttttagtgatgctacattacgagcc
ttagaaaacgaacgtccgcaaacagattcggcatttttagccattagtggtgttggaaac
agaaaattagaagtgtacggtggcgaatttatggacgaaattaaaaaatttataaaagat
aaaaaacaaggtaaaaaagatacgactttagaaacctataaattatacaaagaaggtttt
acaattgatgaaatagccgaaaaaagaagcttaaaagcccaaacaatattttctcattta
tcaaaattatatttagaaggaaaagagattgatttgcaaaaatttataactgccgatact
gtaaagttaatagcaaatgccaaaaaagttttaaaaaatgaaccaactttaaaaccttat
tttgaatttttaggcgaaaaagttccgtatgaacaaatacgaattgggcttagtattttg
caaaaaaatagttga
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