Tenacibaculum finnmarkense: PJJ26_11110
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Entry
PJJ26_11110 CDS
T08880
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tfi
Tenacibaculum finnmarkense
Brite
KEGG Orthology (KO) [BR:
tfi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tfi03032
]
PJJ26_11110 (topA)
03400 DNA repair and recombination proteins [BR:
tfi03400
]
PJJ26_11110 (topA)
Enzymes [BR:
tfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PJJ26_11110 (topA)
DNA replication proteins [BR:
tfi03032
]
Prokaryotic type
DNA Topoisomerases
PJJ26_11110 (topA)
DNA repair and recombination proteins [BR:
tfi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PJJ26_11110 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Motif
Other DBs
NCBI-ProteinID:
WCC41990
LinkDB
All DBs
Position
complement(2433981..2436491)
Genome browser
AA seq
836 aa
AA seq
DB search
MAKNLVIVESPAKAKTIEKFLGKDFQVESSYGHIADLPSKELGINVDGDFSPKYIVSDDK
KPVVKKLKALVKKAETVWLASDEDREGEAIAWHLKEQLKLNDDNTKRIVFHEITKNAILK
AVDNPRDIDYNMVNAQQARRVLDRLVGYELSPVLWRKVKGGLSAGRVQSVAVRLIVERER
SILDFTSETHYKVIAKFSNTSGKTFKATIPKNFPTKKTAENFLKSCADADFSIADLTTKP
AKKSPAAPFTTSTLQQEASRKLGFPVGKTMQVAQRLYEAGLITYMRTDSVNLSEDARNAA
EEEISNYYGKEYSKQRVFKTKAKGAQEAHEAIRPTSMKMHAIDTEYDQTRLYDLIWKRTL
ASQMSDAQLERTNVKIANSENTKIFTANGEMIKFDGFLKVYLEGTDNEEEEQAGMLPNLT
TGETLNYNFINATQRFTSPPYRFTEASLVKQLEELGIGRPSTYAPTISTVQRRGYVEKGE
NEGLERNYEQMILSNSVIESELLTEKTGSNKNKLVPTDIGNIVNDFLVANFSNILDFGFT
ARVENSFDDISEGNEDWIEMIKGFYGDFHKTVVDVQENAERESGERILGKHPESGKTVLV
RLGKFGPIAQIGAPEDEEKQFASLNKDQNLGTITIEEALELFLLPKTLGTYEDEEVIVSN
GRFGPYIKFGAMFVSLDKGENPMEVDLPRAEELIVAKQKADAPIYFYEELPVQKGVGRFG
PYLKWNSIFINVNKKYDFDNLTDADIIELIEVKKQKEIDKVLHNWEDVEIRVEKARWGRF
NVIKGKIKVEMPKTTDIENMTKEEAVKIIEAKTPKKKVAKKKAVKKVVKKKVVKKK
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaatttagttatagttgagtcacctgcaaaggcaaaaacgattgaaaaattc
ctaggaaaagattttcaagtagaatctagttatggtcatattgcagatttgccatcgaag
gaattagggattaatgttgatggcgattttagcccaaaatacattgtttctgatgataaa
aaaccagttgttaagaaattaaaagcattggtgaaaaaagcagaaactgtttggttagca
agtgatgaagatagagaaggagaagcaattgcttggcatttaaaagagcaattaaaattg
aatgacgacaatacaaaacgtattgtttttcatgaaattaccaaaaacgctattttaaaa
gcggttgataatccaagagatattgactacaatatggtcaatgcacaacaagctcgtaga
gttttagataggcttgttggttatgaattatcaccagttttatggcgtaaagtaaaagga
ggtttatcggcaggaagagtgcaatcggtagcggttcgtttaattgtagaaagagaacga
agtattcttgattttacatcagaaacacattataaggttattgcaaagttttcgaatact
agcggaaaaacatttaaagcaacgattccgaagaattttcctactaaaaaaacagctgaa
aatttcttgaaatcatgtgcagatgccgatttttctattgctgatttaactacaaaacca
gcaaaaaaatcgccagcagcaccatttacaacatcaactttacaacaggaagcttctcgt
aaattaggctttccggtaggtaaaacaatgcaggttgcacagcgtttatacgaagcaggt
ttaattacttacatgagaaccgatagtgttaatttatccgaagatgcaagaaatgcagcc
gaagaagaaattagcaattattacggaaaagaatatagtaaacaacgtgtttttaaaacc
aaagcaaaaggtgcacaggaggcgcatgaggcaattcgtcctacaagcatgaaaatgcac
gctattgataccgaatacgatcaaaccagattgtacgatttaatttggaaaagaacctta
gcttcgcaaatgagtgatgcgcaattagagcgtaccaatgtgaaaatagccaattctgaa
aataccaaaatatttacggcaaacggtgaaatgattaagtttgatggtttcttaaaagta
tatttagaaggaacagataatgaagaggaagagcaggcaggaatgttaccaaacttaact
actggcgaaactttaaattataatttcatcaacgcaacacagcgttttacaagtccgcca
taccgttttacagaagcatctttagtaaaacaattagaggagttaggtatcggaagacca
tcaacatacgcgccaacaatttctacagtacaacgtagaggctatgttgaaaaaggagaa
aatgaaggtttagaacgaaattatgaacagatgattctgtctaatagcgttattgaaagt
gaattattgaccgaaaaaacagggtcaaataaaaataaattagtacctactgatattgga
aatattgtcaatgattttttagtggcaaatttttcaaatattttagattttggctttaca
gctagagttgaaaattcttttgatgatatttcagaaggaaatgaagattggatagaaatg
attaaaggtttttatggtgattttcataaaacggtagtagatgtacaagaaaatgctgaa
agagaaagtggtgaacgtattttaggaaaacatcctgaatcaggaaaaacagtgttagtt
cgtttaggaaagtttggaccaattgcacaaattggtgcccctgaagatgaagaaaagcag
tttgctagcttaaataaagatcaaaacttaggaactataacaatcgaagaagcattagaa
ttgttcttgcttccgaaaaccttaggaacttatgaagatgaagaggtaattgtttctaac
ggacgttttggaccttatatcaaatttggagcaatgtttgtttctttagataaaggagag
aatccgatggaagtagatttaccaagagctgaagaattaattgtagcaaagcaaaaagca
gatgcgccaatttatttttatgaagaattacctgtacaaaaaggtgtaggacgttttggt
ccatacttaaaatggaattcaatttttatcaatgtgaataaaaagtacgattttgacaac
ttgactgatgccgatattattgaattaattgaggttaaaaaacagaaagaaatcgataag
gtactacataactgggaagatgttgaaattagagtagaaaaagcacgctggggtcgtttt
aatgttattaaaggtaaaattaaggtagaaatgcctaaaactactgatattgaaaacatg
accaaagaagaggctgtaaaaatcattgaagcaaaaacaccaaaaaagaaagtagcaaaa
aagaaggctgtaaaaaaggtggtaaaaaagaaagtagtgaaaaagaaataa
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