Tenacibaculum finnmarkense: PJJ26_11935
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Entry
PJJ26_11935 CDS
T08880
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tfi
Tenacibaculum finnmarkense
Pathway
tfi03030
DNA replication
tfi03430
Mismatch repair
tfi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PJJ26_11935 (dnaE)
03430 Mismatch repair
PJJ26_11935 (dnaE)
03440 Homologous recombination
PJJ26_11935 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tfi03032
]
PJJ26_11935 (dnaE)
03400 DNA repair and recombination proteins [BR:
tfi03400
]
PJJ26_11935 (dnaE)
Enzymes [BR:
tfi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PJJ26_11935 (dnaE)
DNA replication proteins [BR:
tfi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PJJ26_11935 (dnaE)
DNA repair and recombination proteins [BR:
tfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PJJ26_11935 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
HHH_3
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
WCC42136
LinkDB
All DBs
Position
2613861..2618234
Genome browser
AA seq
1457 aa
AA seq
DB search
MYLIFDTETTGLPKNWNAPFTDTDNWPRATQIAWQLHDELGNLIEHHDFLIKPEGFNIPY
DAERIHGISTDLAQEQGIELPEGLALFNEALSKTKFVVGQNVGFDLNIMGCEFHRLGVDT
ILNDLPILDTCTEQTAKMCQIPGGRGGKFKLPTLTELHKHLFGFGFGDAHNATADVEATT
RCFLELVRLRQFTKEQLDVSDDFFDNFNKTNPTPIQVIGLNHLNLKKESEKIRARIEKAK
GVTKTISTNEGLAKLENASFAHLHNHTQYSVLQSTIQIGNLVKAAAKDNMSAVAMTDTGN
MMAAFHFVQAVLNHNKSVETANVEAIEKGETPTQKPLKPIVGCEFNICGDHTNKSQKDNG
YQVVLLAKNKKGYHNLAKMSSIAFVDGFYYIPRIDRKVVEQYKEDIIVLTGSIYGEVPSK
ILNVGEAQAEEALLWWKAQFGDDLYIELMRHNQDDERVVNETLLKFSKKHNVKTVASNNT
FYLDKKDANAHDILLCVKDGEKQATPKGRGRGYRYGLPNDEYYFKSSEEMKKLFADLPEA
IINIQEIVDKITPYTLARDVLLPAFDIPDEFKDEEDNKDKGKRGENNFLRHLTYVGAKKR
YGEITESIRERLDFELEVIEKTGYPGYFLIVEDFIREARNMDVAVGPGRGSAAGSVVAFC
LWITNIDPIKYDLLFERFLNPERVSMPDIDIDFDDEGRGRVMDYVIDKYGANQVAQIITY
GTMAAKSSIRDTARVLDLPLFEADRIAKLIPGMKLKKIFSLDDKQLSEKLRTEEIELVNE
LKRLSNGSDLMSETINKARILEGSVRNTGIHACGVIITPDDITKFVPVALAKDSDMYVTQ
FDNSVVEDAGLLKMDFLGLKTLTLIKDTVKIVKARHDVLLDPETFPLDDVKTYELFQRGE
TVGIFQYESPGMQKHMRSLKPTVFEDLIAMNALYRPEPMEYIPSFIRRKHGDEEIEYDLP
AMEEYLSETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFVKQS
IANGHDAKKLEKIWTDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNM
NDIKSVSFFMEECKRAGITVLVPDVNESFSKFSVNKEGAIRFGMAAIKGVGGLAVKAIIN
EREENGTFNSVFDVAKRVDLRVANKKAFEGLILAGGFDSFGTAHRAQYFVEDEKNQKFIE
KILRFGNKHQENLNSAQVSLFGGGSEEEMPEPIIPLCDTWGTMELLGREKEVVGIYISAH
PLDDFKNEMKFCNAKLSYYNDLPKYEGMALTFGGIVTDVQHRISKAGKGWATFFIEDYTE
NYEFRIFGEEYLKFKHFLDINSFLFVKTMVKPGWTNREGIKGEPRISFTDFSILHDIMDK
LCKKVTIRMPLKEVTENRIKNLQHLCTTNKGSQNLHFTIWDEEEKIKLEAPSRNTKVKIT
NEFLNTLDQQHINYKLN
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaatttttgatactgaaactaccggattaccaaaaaactggaacgcacctttt
acagatactgataattggccaagagcaacccaaattgcatggcaattgcatgatgaatta
ggaaacttaattgaacatcatgatttccttattaaacctgaaggatttaatattccttat
gatgctgaaagaatacacggtatttctactgatttagctcaagaacaaggaattgaactt
cctgagggtttggctttattcaacgaagcattaagtaaaacaaaatttgtggtaggtcaa
aatgtaggttttgatttaaatattatgggttgtgaatttcatcgtttaggtgtcgatacc
attttaaacgacctccctattttagatacttgtacagagcaaaccgctaaaatgtgtcaa
attcctggtggtcgtggcggtaaatttaaattacctacgctaacagaattacacaaacat
ttattcggttttggttttggtgatgctcacaacgcaactgccgatgtagaagcaacaaca
cgttgttttttagaattggttcgtttgcgtcaatttaccaaagaacaattagatgtttct
gatgatttctttgataatttcaacaagaccaaccctactcctattcaagtaatcggatta
aatcacttaaacttaaagaaagaaagtgaaaaaattcgtgcaagaattgaaaaagcaaaa
ggtgttacaaaaaccatcagtactaatgaaggtttagcaaaattagaaaacgccagcttt
gcacacttacacaatcatacacaatattctgttttacaatcgaccattcaaataggaaat
cttgtaaaagcagctgctaaagataatatgtcggcagtagcaatgaccgatactggtaat
atgatggcggcttttcattttgtacaagcggttttaaatcataataaatccgtagaaaca
gcaaatgttgaagccattgaaaaaggagaaacaccaactcaaaaacctttaaaacctatt
gttggttgtgaatttaatatttgtggagatcataccaataaaagtcaaaaagacaacggt
tatcaagttgttttattagctaaaaataaaaaaggatatcacaatttagcaaaaatgtct
tctatcgcttttgttgatggattttattatatcccaagaatcgacagaaaagtagttgaa
caatataaagaagacatcattgtgcttacaggtagtatctatggtgaagttcctagtaaa
atattaaatgttggtgaggcacaagccgaagaagcacttctttggtggaaagcacaattt
ggtgatgatttatacatcgaattaatgcgtcataatcaagacgatgaaagagttgttaac
gaaacacttttaaaattttcaaaaaaacacaatgtaaaaactgttgcatctaacaatact
ttttatttagataaaaaagatgccaatgctcatgatattttattgtgtgtaaaagatggt
gaaaaacaagctactccaaaaggacgaggacgaggatatcgctacggtttaccaaacgat
gaatattacttcaaatcatccgaagaaatgaaaaaattgtttgcagatcttcctgaagca
attataaatattcaagaaattgttgataaaataacgccctacaccctagctcgtgacgtt
ttattacctgcctttgatattcctgatgaatttaaagatgaagaagataacaaagacaaa
ggaaaacgaggtgaaaataattttttacgtcatttaacctatgtcggtgcaaaaaaacga
tacggagaaattaccgaaagtattcgtgaacgtttagattttgagttggaagtaattgaa
aaaactggctatccaggatactttttaattgttgaagattttattcgagaagcaagaaat
atggatgttgctgtaggtcccgggcgtggttctgcggcaggttcggtagttgctttttgc
ttgtggattacaaatattgacccaattaaatacgatttactttttgagcgtttcttaaat
cctgaacgtgtatcaatgcccgatattgatattgattttgatgatgaaggacgtggacgt
gtaatggattatgtaattgataaatatggtgcaaatcaggtagcgcaaattataacctac
ggaactatggcggcaaaatcttctattagagataccgctcgtgttttagatttacctctt
tttgaagccgatagaattgccaagttaattccgggaatgaagctgaagaaaatattttct
ttagatgataaacaactaagtgaaaaacttagaaccgaagaaattgaattagttaacgaa
ttaaaaagactttctaatggttctgatttaatgtcggaaaccattaataaagctcgaatt
ttagaaggttctgttcgaaatacaggaatccatgcctgtggtgttattattacgcctgac
gatattacaaaattcgtacctgttgccttggcaaaagattctgacatgtacgtaacccag
tttgataactcggttgtagaagatgctggtttattaaaaatggatttcttgggattaaaa
acgctaaccttaattaaggataccgttaaaattgtaaaagcacgtcacgatgtactttta
gatcctgaaacttttcctttagatgatgtaaaaacctacgaacttttccaaagaggagaa
actgttggtatttttcaatatgaatctccaggaatgcaaaaacatatgcgctcattaaag
ccgactgtttttgaagatttaattgccatgaatgccttgtatcgtccagagccgatggaa
tatattccttcttttatccgaagaaaacacggtgatgaagaaatcgaatatgatttacca
gccatggaagaatatttatcggaaacctacggaattacggtttatcaagagcaagtaatg
ttattatcgcaaaaacttgccgattttacaaaaggtgaagccgatgttttacgtaaggca
atgggtaaaaaacaaattgcggttttagataaaatgaaacctaaatttgtaaaacaatcc
atagcaaacgggcatgatgctaaaaaattagaaaaaatttggacggattgggaagccttc
gcatcgtatgcctttaacaaatcacactcgacttgttatgcttggattgcctatcaaaca
gcttatttaaaagcacattatcctgccgaatatatggcagcagtgctttcaaataatatg
aatgatattaaatcagtttcattttttatggaagaatgtaaacgtgcaggaattaccgtt
ttagtgcctgatgttaatgaatcattttctaaattttcagtaaataaagaaggtgctatt
cgttttggaatggcagctattaaaggtgttggaggacttgcagtaaaagcaattattaac
gaacgagaagaaaatggtacttttaattctgtttttgatgttgctaaacgagtagattta
cgtgtagcaaataaaaaagcatttgaaggtttaattttagcgggtggttttgattctttt
ggaactgcacacagagcacaatattttgtagaagatgaaaaaaatcaaaaatttatagag
aaaatattgcgttttggaaacaagcatcaagaaaacttaaactcggcacaggtatcatta
tttggaggtggttctgaggaagaaatgccagaaccaattattccactttgtgatacttgg
ggaactatggaactattaggaagagaaaaagaagtcgttggtatttatatttctgcgcat
ccgctagatgattttaaaaatgaaatgaagttttgtaacgcaaagctttcttactacaat
gatttgcctaaatatgaaggaatggcattgacttttggtggaattgttaccgatgtacaa
catcgaatttcgaaagcaggaaaaggatgggcaacattttttattgaagattatactgaa
aattatgaattcagaatttttggcgaagagtatttaaaattcaaacactttttagatatt
aattcatttttatttgtaaagacgatggtaaaaccaggttggacaaatagagaaggcata
aaaggagaaccacgaattagctttactgatttttctattttacacgatattatggataaa
ctctgtaaaaaagtaaccataaggatgcctttaaaagaagtgactgaaaaccgaattaaa
aatttacagcatttatgtaccaccaataaaggttctcagaacctgcactttactatttgg
gatgaagaagaaaaaataaaattagaagcacctagtagaaataccaaagttaaaataacc
aacgagtttttaaatactttagatcaacaacatattaattataaattgaattaa
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