Tenacibaculum finnmarkense: PJJ26_12575
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Entry
PJJ26_12575 CDS
T08880
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
tfi
Tenacibaculum finnmarkense
Pathway
tfi03030
DNA replication
tfi03410
Base excision repair
tfi03420
Nucleotide excision repair
tfi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PJJ26_12575 (polA)
03410 Base excision repair
PJJ26_12575 (polA)
03420 Nucleotide excision repair
PJJ26_12575 (polA)
03440 Homologous recombination
PJJ26_12575 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tfi03032
]
PJJ26_12575 (polA)
03400 DNA repair and recombination proteins [BR:
tfi03400
]
PJJ26_12575 (polA)
Enzymes [BR:
tfi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PJJ26_12575 (polA)
DNA replication proteins [BR:
tfi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PJJ26_12575 (polA)
DNA repair and recombination proteins [BR:
tfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PJJ26_12575 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PJJ26_12575 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_2
RNase_H_2
DUF1198
HHH_5
Motif
Other DBs
NCBI-ProteinID:
WCC42254
LinkDB
All DBs
Position
2741897..2744785
Genome browser
AA seq
962 aa
AA seq
DB search
MENQKRLFLLDAFALIFRGYYAFIKNPRINSKGMDVSAILGFTNSMLDVIKRERPDHLAV
CFDRGGSVDRRAAFPEYKANRQETPEAIKIAIPYIEAMLKAMNIPVVVKSGYEADDIIGT
LAKKAEKAGYKTFMVTPDKDFAQLVSENIFMYRPRFGGGYETWGIAEVQEKFGVERPEQV
IDYLGMMGDAVDNIPGLPGVGDKTAKKFLAQYGSMENLLANTADLKGKMKEKVIANAELG
LLSKELATIMLDVPVDFDQDNFEMCQPNIQATADIFNELEFKRLADTFVRVFTAAVPVKP
GEKASEENTESKTENLADNSLKSQEETKAIPVTDSDGQFDLFAAPGTGTVNQKVAVSGFK
TIKNTPHFYQQVNSPLSRKILLEKLMQQKSVCFDTETTGLKALEVELIGISFSWEIGKGY
YVSFPENQEETKVILEEFKPFFEASTIQKIGHNLKYDLKVLSNYTISVKGKLFDTMIAHY
LINPDMRHGMDILAETYLKYQPVPITDLIGKKGKNQLSMRTVELAKQTEYAVEDADITLQ
LKEHFTKELESGNVTKLFNDIETPLVSVLTAMEIEGINLNVPFLKELSVDLTNDIERLEK
NIYQQAGEEFNIASPKQLGIVLFENMALVEKPKKTKTGQYSTAEEVLSLLAKDHQIIRDI
QEYRQYKKLKSTYVDALPNEVNIKTGRVHTSYAQAVAATGRLSSNNPNLQNIPIRTKRGQ
EVRKAFIPRDENYVLLAADYSQIELRIIASLSQEETMIEAFKNGEDIHASTASKVFNVPL
DEVTREQRSNAKTVNFGIVYGVSAFGLSNQTDLSRKEAKALIDTYYETYPKLKNYMAKQV
DFARDNGYVETVLNRRRYLKDINSRNGMVRSGAERNAVNAPIQGSAADIIKLAMINIYKR
FEKENFKSKMLLQVHDELVFDAHKDELEIIKPIIKQEMENAFKMEVPLDVEIGIGENWLQ
AH
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatcaaaaacgactttttttactagatgcttttgcattaatttttagaggatat
tacgcctttattaaaaatccacgaattaactcgaaaggaatggatgtttcggctattttg
ggttttacaaactcgatgttagatgttataaaacgagaacgccccgaccatttagccgtc
tgttttgaccgtggtggttctgtagatagaagagcagctttccctgaatacaaagccaac
agacaggaaactcctgaggctataaaaattgcgattccatatattgaagccatgttaaaa
gcgatgaatattcctgtggttgtaaaatcaggatatgaagcggatgatattataggaacg
cttgcaaaaaaagccgaaaaagcaggatacaaaacctttatggtgacccctgataaggat
tttgctcaattggtttctgaaaatatttttatgtatcgccctcgttttggcggtggttat
gaaacttggggaattgccgaagttcaagaaaaatttggcgtagaacgtcctgaacaagtg
attgattatttaggaatgatgggcgatgcggtggataatatccctggtttacctggcgtt
ggcgacaaaacggctaagaaatttttagcacaatatggttctatggaaaatctgctagca
aacactgccgatttgaaagggaaaatgaaagaaaaagtaattgcaaatgctgaacttggg
cttttatcaaaagaacttgccactattatgttagatgttcctgttgattttgatcaggat
aattttgaaatgtgtcagccaaatattcaagcaactgccgatatttttaacgaattagaa
tttaaacgtttagccgatacttttgttagggtatttactgctgctgtacctgtaaaacca
ggcgaaaaagcatctgaagaaaataccgaaagtaaaacagaaaacttggcagataactca
ctgaaaagccaagaagaaacaaaggctattcctgtaacagattccgatggacaatttgat
ttatttgccgctccaggaactggaactgttaatcaaaaagtggctgtttcaggttttaaa
actattaaaaataccccgcatttttatcaacaggtaaattctcctttatcaagaaaaata
ttactagagaaattaatgcaacaaaaatcggtatgttttgataccgaaactacaggttta
aaagccttggaagttgaattaatcggaatttctttttcttgggaaataggaaaaggatat
tatgtttcttttcctgaaaatcaagaagaaacaaaagttattttagaagaatttaagcca
ttttttgaagcatcaactattcaaaaaattgggcataatttaaaatatgacctcaaagtt
ttatcaaattatactatttctgttaaaggaaaattatttgataccatgattgcgcattat
ttaattaaccctgatatgcgtcatggaatggatattttagccgaaacatatttgaaatat
cagcctgttccaattaccgatttgattggtaaaaaagggaaaaatcaactgtcaatgcga
actgttgaacttgccaaacaaaccgaatatgccgttgaagatgccgatattaccttgcaa
ttaaaagaacattttacaaaagagctagaaagtggaaatgtaaccaagctatttaatgat
attgaaacgcctttagtatcggttttaacagcgatggaaattgaaggaattaacttaaat
gtgccatttttaaaagaactttctgttgatttaacaaatgatattgagcgtttagaaaaa
aatatttaccagcaagcgggtgaagaatttaatattgcttcaccaaaacaattgggtatt
gtattgtttgaaaatatggcgttggttgaaaagccaaaaaagaccaaaacagggcaatat
tctaccgccgaagaggtgctttctcttttagcgaaagaccatcaaattattagagatatt
caagaatatcgtcagtataaaaaactaaaaagcacctatgttgatgctttgccaaacgaa
gtaaacataaaaacagggcgtgttcacacctcgtatgcacaagcggttgctgctacagga
aggttgagttctaacaacccgaacttgcaaaatattccgattcgtacaaaaagaggacag
gaagttcgaaaagcttttatcccaagagatgaaaattatgtattattagctgccgattat
tctcaaattgaattgcgaattattgcttcattaagccaagaagaaaccatgattgaagcc
tttaaaaatggcgaagatattcatgcttctacggcatcaaaagtttttaatgttccttta
gatgaagtaactcgtgagcaacgtagcaacgcaaaaacggtcaattttggtattgtttat
ggggtttcggcattcggattgagcaatcaaaccgatttatctcgaaaagaagcaaaagca
ttgattgatacctattatgagacctatccgaagttaaaaaattacatggcaaaacaagtc
gattttgcgcgtgataatggctatgtagaaacggttttaaatcgtcgtagatatttaaaa
gatatcaattcaagaaatggaatggtgcgttcaggggcggaaagaaatgctgtaaatgcg
ccaattcaaggaagtgccgccgatattataaaactggcaatgattaacatttataagcga
tttgagaaggaaaattttaaatcgaaaatgttattgcaagtgcatgatgaattggttttt
gatgctcataaagatgaattagaaattatcaaaccaattattaagcaagaaatggaaaat
gcctttaaaatggaagttccgttggatgtagaaatcggaattggtgaaaattggttacaa
gcacattaa
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