Tessaracoccus flavus: RPIT_04660
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Entry
RPIT_04660 CDS
T04688
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tfl
Tessaracoccus flavus
Pathway
tfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RPIT_04660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfl03019
]
RPIT_04660
Messenger RNA biogenesis [BR:
tfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RPIT_04660
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Motif
Other DBs
NCBI-ProteinID:
AQP44194
UniProt:
A0A1Q2CDK7
LinkDB
All DBs
Position
1035648..1037324
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AA seq
558 aa
AA seq
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MPDLKLPPKLAPGTLRVIPLGGLGDVGRNMTAFEIDGQIAIVDCGVLFPEDHHPGVDLIL
PALDYLRDRLDDIVALVLTHGHEDHIGAVPYLLKMRSDIPVYGSKLTLAFLSAKLREHRI
REFVLDAVEEGEILEIGNYEFEFLAVNHSIPDALAVAIRTDGGTVLHTGDFKMDQLPLDG
RITDLRGFARLGEEGVDLFLVDSTNAESPGFTTHEKDIEPAMQRVFEAATGKLIVASFAS
HVHRIQQVMDMAVKHGRKVVYVGRSMVRNMSTARDLGYLKVPASTLIELKEIGKYRDDEV
VIVSTGSQGEPLAALSRISNQDHPVISVGQGDTVLLASSLIPGNENSVYRVINGLTRLGA
NVVHKGNAMVHVSGHASAGELLYCYNIIKPRNVLPVHGEVRHLVANGKLATQTGIPAERV
LVIGDGDVVDLKDGVARKVGSVDASYIFVDGSTVGDISESIMDRRILGEEGFVSVITVVD
LHNRRIVSGPEIHTRGLAEEDHVFAEAEKRLTKALTDAMNDGVNDAYRLQQVTRRTVGQW
VAKALRRRPMIVPVVVTT
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacttgaaactgccacccaagctcgctcccggaacgctgcgggtcatcccgctc
ggcgggttgggagacgtgggccgcaacatgacggccttcgagatcgacggccagatcgcg
atcgtcgactgtggcgtgctcttcccggaggatcatcaccccggcgtcgacctgatcctc
cccgcactggactacctgcgcgaccggctggacgacatcgtcgcgctcgtgctgacccac
ggccacgaggaccacatcggcgcggtgccctacctgctcaagatgcgaagcgacatcccg
gtctacggctccaagctgacgctggcgttcctcagcgcgaagctccgcgaacaccgcatc
cgcgaattcgtcctcgatgcggtcgaggagggcgagattctcgagatcggcaactacgag
ttcgagtttctcgcggtcaaccactccatcccggacgcactcgccgtcgcgatccgcact
gatggcggcaccgtgctgcacaccggcgatttcaagatggaccagcttccgctggacggc
cgcatcacggacctgcgcggcttcgcccggttgggcgaggagggggtggacctgttcctc
gtcgactcgacgaacgccgagtcacccggcttcacgacgcatgagaaggacatcgaaccg
gccatgcagcgggtcttcgaagccgccacgggcaagctcatcgtggccagcttcgccagc
cacgtccaccgcatccagcaggtgatggacatggcggtcaagcatgggcgcaaggtcgtc
tacgtcggccgctcgatggtgcgcaacatgtcgaccgcccgcgacctcggctacctcaag
gtgccggcctcgaccctgatcgagctgaaggagatcggcaagtaccgcgacgacgaagtg
gtgatcgtctcgacgggctcgcagggtgagccgctggcggcgctcagcagaatctccaac
caggaccatccggtgatctcggtggggcagggcgacacggtcctgctggccagctcgctc
atccccgggaacgagaactcggtctaccgcgtcatcaacgggctcacccggctcggcgcc
aacgtggtccacaagggcaacgcgatggtccacgtgtccggccacgcatccgcgggcgaa
ctgctctactgctacaacatcatcaagccccgcaacgtcctgcccgtccacggcgaggta
cgccacctcgtcgccaacggcaagctcgcgacccagacagggattcccgctgagcgggtg
ctcgtcatcggcgacggcgacgtcgtggatctcaaggacggtgtggcacgcaaggtgggc
tcggtggacgccagctacatcttcgtcgacgggtcgaccgtcggtgacatctcggagtcc
atcatggaccggcgcatcctgggcgaggagggtttcgtctccgtcatcacggtcgtcgac
ctgcacaaccggcgcatcgtgtcgggaccggagatccacacccgcggtctggcagaggag
gatcacgtcttcgccgaggccgagaagcgcctgacgaaggccctcaccgacgcgatgaac
gacggggtcaacgacgcgtaccggctgcagcaggtcacgcggaggacagtggggcagtgg
gtcgccaaggcgctgcgtcgccgtccgatgatcgtgcctgtggtggtgacgacctga
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