Tessaracoccus flavus: RPIT_06970
Help
Entry
RPIT_06970 CDS
T04688
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
tfl
Tessaracoccus flavus
Brite
KEGG Orthology (KO) [BR:
tfl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfl03019
]
RPIT_06970
Enzymes [BR:
tfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RPIT_06970
Messenger RNA biogenesis [BR:
tfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RPIT_06970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_22
AAA_19
AAA_30
AAA_25
NACHT
T2SSE
nSTAND3
SAP
AAA_23
Ploopntkinase3
PAS_4
ResIII
HA2_N
SLFN-g3_helicase
Herpes_ori_bp
Motif
Other DBs
NCBI-ProteinID:
AQP44587
UniProt:
A0A1Q2CER5
LinkDB
All DBs
Position
complement(1513659..1517435)
Genome browser
AA seq
1258 aa
AA seq
DB search
MRIDPSLPIAAEAERIAGLIRDHQVVVVAGETGSGKTTQLPKICLMAGRERVAHTQPRRI
AARTVAQRIAQEVGVELGDFVGYQVRFTRKVTAATRIKVMTDGILLSELTHDRNLSRYDT
IIIDEAHERSLNIDFLLGYLKQLLPRRPDLRVVVTSATIDTARFSEHFDGAPIVEVSGRT
YPVETRYRPLDDGQDEIDGIAAAVEEIVTESATGDILVFLSGEREIRDAAEAVEGLGAGL
EVLPLFARLSAAEQQRVFQPHGTRRVVLATNVAETSITVPGIRYVVDAGTARISRYSART
KVQRLPIEPISQASANQRAGRCGRIGPGVAIRLYSEDDFESRPLYSEPEILRTNLATVIL
LMAQAGLGEVEKFPFVEAPVVSQINDGVRVLTELGAVHPRKRHDQLRLTRTGRMLARMPV
DPRLGRMLIEGARRRTLETVIVLVAGLTVPDIRERPSEFQAQADELHRRFWGVEPATPTS
EPDQPKRHTAHTGTRKETAKPVLEGGDFEALLNVWNYLRRRRRELSGNAFRKMCRAEYLN
FVRFREWEDLVSQLKEACRELDLDTRGRGDWPDVLTSILSGLLSNVGLAEPDKGKTAPGK
RRPLTEYQGARGARFAIQPGSALAKRTPPLVMAFELVETSRLWARTVAEIKAEWVEQVAG
HVLTRTLSEPSFSPRSATVVASERLTLFGVPIVAGRRTSYAADHPKEAREIFIRSALVEG
EWETRLDLVVKNRAVLADAAKLTDRMRRPDLLISDDDLYAFYDERIPPEVVSGATLDKWL
RSLPREQWPLLTPSGAVVDASALRRSDFPDTWTTGAHRLPLRYVFDPGAGSDGVTVTVRL
ELLGQLDGATFSWQVPGLRRELATGLIRSLPKTLRTSFVPAPDFAGRALAWLDDRGEEGQ
GDFPTALARALTALTGTVVEASDFRRDALDSHLRPTFLVVDNGREVARGDDLDALAERLS
PKVAAKLTRSAGDRAATGQKAWTFGDIPRQTTVGRGVVGYPALVDEGGSVGLQVFDGAAK
ADLSHGRGVRRLLTLTNPDPTRWVVGHLGRTEKLSLADSPYPTVPELLADAWLKAGEQLA
VEQGPLAEVRSQADYEKVALAVRQECPGRTRDVVAVVAKALAQLTQARLLLAGFPADSPV
RRDVTTQLDNLFFNRFISATPDPWFGHLPRYAQAAALRLQAAAAAPDRDAKLQEQIDEVE
DEYAALVDAQPPGPLAPAVEEIAFLIEEFRVSLFAQQLRTAVPVSAKRIRQAIRAVSR
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgaggatcgacccctcgctgccgatcgccgctgaggctgagcgcatcgcggggctcatc
cgggaccaccaggtggtcgtggtggccggcgagaccggatcgggcaagacgacccagctg
cccaagatctgcctcatggcgggccgggagcgggtggcgcacacccagccgcgccgcatc
gccgcccgcacggtggcgcagcggatcgcgcaggaggtcggcgtcgagctgggcgacttc
gtcggctaccaggtgcgcttcaccaggaaggtcaccgccgccacgcgcatcaaggtgatg
accgatggcatcctgctgtccgagctcacccacgaccgcaacctcagccgctacgacacg
atcatcatcgacgaggcgcacgaacgcagcctcaacatcgacttcctgctcggctacctc
aagcagcttctgccgcgacgcccggatctgcgtgtcgtcgtgacgtcggccaccatcgac
acagcccgcttctccgagcacttcgacggtgcgccgatcgtcgaggtctccggacggacc
tatcccgtggagacccgctaccgccccctcgacgacgggcaggacgagatcgacgggatc
gccgccgccgtcgaggagatcgtgacggaatcggccaccggcgacatcctggtcttcctc
agcggcgaacgcgagatccgcgacgctgccgaggccgtggaggggttgggtgcggggctg
gaggtgctgccgctgttcgcgcggctgtcggcggccgaacaacagcgcgtcttccagccg
cacgggaccaggcgggtggtgctggccaccaacgtcgcggagacctcgatcaccgtgccg
ggcatccggtacgtcgtcgacgccgggacggcgcgtatctcccgctactcggcgcggacg
aaggtccagcgcctgcccatcgaacccatctcccaggcgtcggcgaaccagcgcgccggg
cgctgtggccggatcgggcccggggtggcgatccgcctctacagcgaggacgacttcgag
tcgcgtccgttgtactcggagccggagatcctccgcaccaacctcgcgaccgtcatcctg
ctcatggcccaggcggggctgggcgaggtggagaagttccccttcgtcgaagcgccggtg
gtgtcgcagatcaacgacggcgtgcgggtcctgaccgagctgggagccgtgcacccacgc
aagcgccacgaccaactgcgcctgacgcggactggccgcatgctagcccggatgccggtg
gacccccggctcggcaggatgctgatcgagggcgcgcgcagacgaacgctggagaccgtc
atcgtgctcgtggccgggctcaccgtgcccgacatccgcgagcgcccctccgagttccag
gcccaggccgacgagctgcaccggcggttctggggagtcgagcccgccaccccgacatcc
gagccggaccagccgaagcgacacaccgcgcacacgggcacgcgcaaggagacggccaag
ccggtgctcgagggtggagacttcgaggcgctgctcaacgtctggaactatctgcgccgc
cgccgtcgggagctgtcgggcaatgcgttccgcaagatgtgccgggccgagtacctcaac
ttcgtccgcttccgggagtgggaggacctcgtctcccagctgaaggaggcctgccgggag
ctcgacctcgacacgcgcggccggggcgactggccggacgtgctgacctccatcctcagc
gggttgctgagcaacgtggggctggcggagcccgacaagggcaagaccgcgcccggcaag
cgacgcccgctcaccgagtaccagggcgcccggggcgcgaggttcgcgatccagcccggg
tcggcgttggcgaagcgcaccccgccgctcgtgatggcgttcgagctggtggagacctcg
cgactgtgggcccgcacggtggccgagatcaaggccgagtgggtggagcaggtggccggg
cacgtcctgacccgcaccctctcggagccgagcttctcgccccggagcgccaccgtcgtc
gccagcgagcggctgaccctcttcggcgtgccgatcgtggcgggccgacgaacgagctac
gcggccgaccaccccaaggaggcccgcgagatcttcatccggtccgccctcgtcgagggg
gagtgggagaccagactcgatctcgtcgtgaagaaccgggccgtcctcgccgacgccgcc
aagctgaccgaccggatgcgccggccggacctgctcatctccgacgacgacctgtacgcg
ttctacgacgagcggatccccccggaggtggtgtcgggggcgacgctcgacaagtggctg
cgctcgctgccccgtgagcagtggccgctcctcaccccgtccggggccgtggtcgacgcc
tccgcgctgcggcgctccgacttccccgacacctggaccactggcgcgcacaggctaccg
ctgcgctacgtcttcgacccgggcgcaggcagcgacggcgtgaccgtcaccgtgcggctg
gaactcctcggacagctcgacggagcgacgttcagctggcaggtgcccgggctgcgccgg
gagctggccaccgggctcatcaggtcgctgccgaaaaccctgcggaccagcttcgtcccc
gcccccgacttcgccggccgcgccctcgcctggctcgacgaccgcggcgaggaaggtcag
ggagacttcccgaccgccctggcccgtgcgctcaccgcgctcaccggcaccgtcgtcgag
gcgtccgacttccggcgagacgcactcgactcccacctgcgtcccacgttcctggtggtc
gacaacggccgtgaggtggcgcgcggagacgacctcgacgcgctcgccgagcgactgtct
cccaaggtggcggcgaagctcacccgctcggccggggaccgcgccgcgactggccagaag
gcgtggaccttcggcgacatcccgcggcagaccaccgtggggcggggcgtcgtcgggtat
ccggccctcgtcgacgagggcggctccgtcgggctgcaggtgttcgacggcgccgcgaag
gcggatctgtcgcacggccgcggagtccgccgcctgctcacgctcaccaaccccgacccg
acccggtgggtggtgggacacctcggccgcacggagaagctctcgctggcggactcgccc
tacccaaccgttcccgaactgctcgccgacgcctggctgaaggcgggcgaacagctggcc
gtcgagcaggggcctctcgccgaggtcaggagccaggcggactacgagaaggtcgcgctc
gccgtgcgtcaggaatgtccggggcgcacccgcgacgtcgtggccgtcgtggcgaaggct
ctggcgcagctcacccaggcgcggctgctcctcgccggtttccccgcggacagccccgtg
cgccgcgacgtgacgacccaactcgacaacctcttcttcaaccggttcatctcagccaca
cccgatccgtggttcgggcacctgccgcgctacgcccaggccgccgccctgcggctccag
gcggcggccgcggccccggaccgtgacgcgaagctccaggagcagatcgacgaggtcgag
gacgagtacgcggccctcgtcgacgcccaaccgcccggcccgctggcgccggccgtggag
gagatcgcgttcctcatcgaggagttccgcgtcagcctcttcgcgcagcagctgcgcacg
gccgtgcccgtctcggccaagcggatccggcaggccatccgggccgtcagtcgctga
DBGET
integrated database retrieval system
