Tessaracoccus flavus: RPIT_08730
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Entry
RPIT_08730 CDS
T04688
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tfl
Tessaracoccus flavus
Pathway
tfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RPIT_08730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfl03019
]
RPIT_08730
03009 Ribosome biogenesis [BR:
tfl03009
]
RPIT_08730
Enzymes [BR:
tfl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RPIT_08730
Messenger RNA biogenesis [BR:
tfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RPIT_08730
Ribosome biogenesis [BR:
tfl03009
]
Prokaryotic type
rRNA processing factors
RPIT_08730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
Motif
Other DBs
NCBI-ProteinID:
AQP46095
UniProt:
A0A1Q2CJ73
LinkDB
All DBs
Position
complement(1872964..1875663)
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AA seq
899 aa
AA seq
DB search
MDGTTQTADEPAERAQQPQQPEQTEQAAAPAQETPKSPESPSPRAKSMRVHLLAKEFGIP
SRELIAKLNELGEEVRSASAVLKAPVVERVRAAMAEPTSEQEPEETTAAPEEAQETPAAQ
TSDTRAEDAPAQEAPSQEAAAQEAPAEQTTEAQPRRRRRAASRPAGAPAPVPEALASPFA
PSTPVQSEPAADVAPAQPTPDRDSGSTDAEPPQERRAQGEQRSRRRRATRPAAAPEPSGE
ESGDDIAAALRAAEEAAGARRGNKDDNRDDPSREERLAALAGAIAGTDDEESRPDQRSED
TDRPDEDDDESDESSESDSADDDRPNRRRRRRGGRRRRRGGRDDASDDESDDSDSDSDES
DDSNDGETEQKRDDSSDAEPESDDDNGDGDSGSTRRRRRRRRRENDDSSSSSSGDEVTGI
EGSTRMEAKRQRRKESRAAGRRRAPILSEAEFLARRESVDRKLVIRQSEEYTQLAVIEDN
ILVEHYVDKASAASLIGNIYVGKVQNVLPSMEAAFIDIGRGRNAVLYAGEVDWASFGATG
ENRKVENVLKSGQSVLVQVTKDPVGAKGARLTSHISLPGRYIVYSPGGHLSGISRKLPDA
ERNRLRNVLGGLISDDESVIVRTAAEGASEEELVRDVNRLKAQWEIIEKKSKTGGAPQAL
YSEPDLTLRIVRDLFTEDFASLVVQGDGGPEDAYDAISAYVSHVAPHLAERLVRFEPRED
GRDAFAEYKIDDQIAKALDRKVFLPSGGSLVIDRTEAMTVIDVNTGRFTGSGGNLEATVT
SNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPSNRELLLRRLVECLGRDRTRHQVAEVT
SLGLVQLTRKKIGTGLAEAFTEQCEHCNGLGYQRFEEPVDSQAPSDGGERKSSSRRRRK
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
gtggacgggaccacccagacagccgatgagcctgccgaaagagcccaacagccccaacag
cccgagcagaccgagcaggccgcggccccagctcaggagacccccaagtccccggagagc
ccgagcccgcgcgcaaagtcgatgcgggtgcatctcctcgccaaggagttcgggatcccg
agccgagaactgatcgccaagctcaatgagctgggcgaagaggtgcggagcgcctccgcc
gtcctcaaggcacccgtcgtcgagcgagtgcgtgccgcgatggccgagccgacgtcggag
caggagccggaggagaccaccgccgcgcccgaggaagcccaggagacgcccgcggcgcaa
acctcggacacccgggccgaggacgctcctgcccaggaagcccccagccaggaagctgca
gcccaagaagctcccgctgagcagaccacggaggcgcagccgcgccgacgtcgccgggcg
gcgtcgcgacccgccggtgcgccggcccctgttcccgaggcgctggcctccccattcgcc
ccgtcgacaccggtccagtcggagcccgcagccgatgtggcgcccgcccagccgacgcct
gatcgggacagcgggtcgaccgatgcggaaccgccgcaggagcggcgcgcacagggtgaa
cagcgttcgcgccgtcgccgggctacgcgtcccgcagccgctcccgagcccagcggcgag
gagtcgggtgacgacatcgccgccgccctccgcgccgcggaggaggcagccggcgcccgt
cgaggcaacaaggacgacaaccgcgacgatccgtcccgcgaggagcgcctggctgctctc
gccggtgccatcgccggcaccgacgatgaagagtcccgccccgaccagcgctcggaggac
acggaccgaccggacgaggatgacgacgagagcgatgagtcgagtgagtcggattcggct
gacgacgaccgtcccaaccgtcgccgtcgccgccgtggcggtcgccgtcgtcgtcgggga
ggccgcgatgacgcctccgacgacgagtcggacgactcggactccgactccgacgagtcc
gacgactccaacgacggcgaaacagagcagaagcgcgacgacagcagtgacgccgagcca
gagtccgacgacgacaacggcgatggtgattcgggctcgacccgccgtcgtcgccgtcgc
cggcgtcgcgagaacgacgactcgtcgtcgtcctcctccggcgatgaggtaaccgggatc
gagggctccacccgcatggaggccaagcgccagcggcgcaaggaatcccgtgccgctggt
cggcgcagggcgcccatcctgagcgaggctgaattcctggcccgccgtgagtccgtggat
cgcaagctggtcatccgccagtcggaggagtacacgcagctcgcggtcatcgaggacaac
atcctcgtcgagcactacgtcgataaggcgtcggcggcatcgctgatcggcaacatctac
gtcggcaaggtgcagaacgtgctgccgagcatggaggccgcgttcattgacatcggccgc
ggccgcaacgccgtgctctacgccggtgaggtggactgggcctcgttcggcgccacgggc
gagaaccgcaaggtcgagaacgtcctgaagtctggccagagcgtgctcgtccaggtgacc
aaggatccggtcggcgccaagggcgcccgcctcaccagccacatctcgctgcccgggcgc
tacatcgtctactcgcccggtggccacctgagcggaatctcccgcaagctccccgacgcc
gagcgcaaccgtctgcgaaacgtgctgggcgggctgatctccgacgacgagagcgtcatc
gtgcgcaccgccgcggagggcgcgagcgaagaggagctggtacgcgacgtcaaccgtctc
aaggctcagtgggagatcatcgagaagaaatcgaagaccggcggggcgccgcaggcgctc
tactcggagcccgacctgacgctgcgaatcgtccgcgatctcttcaccgaggatttcgcg
tcgctggtggtccagggcgacggtggtcccgaggacgcctacgacgccatctcggcctac
gtgtcccacgtggcaccgcatctcgccgaacggctcgtccggttcgagccacgtgaggac
gggcgcgacgccttcgccgagtacaagatcgacgaccagatcgccaaggctctcgatcgc
aaggtgttcctgccgtccggaggctcgttggtcatcgaccgcaccgaggcgatgaccgtc
atcgacgtcaacacgggcaggttcacgggctcgggtggcaacctcgaggccacggtcacg
agcaacaacctggaggcggccgaggagatcgtccgacagctcaggctgcgcgatatcggc
gggatcatcgtgatcgacttcatcgacatggtgctgccgagcaaccgtgagctgctgctc
aggcgcctggtggagtgcctcggccgcgaccggacccgccaccaggtggccgaggtgacg
agcctcgggttggtccagctgacgcggaagaagatcgggaccggcctcgcggaagccttc
acggagcagtgcgagcactgcaacggtttgggctaccagcgcttcgaggagcctgtggat
tcgcaggcaccctcggacggtggggagcgcaagtcctcctcccgccgccgtcgcaagtga
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