Tannerella forsythia: BFO_0707
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Entry
BFO_0707 CDS
T01682
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tfo
Tannerella forsythia
Pathway
tfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFO_0707 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfo03019
]
BFO_0707 (rnr)
03016 Transfer RNA biogenesis [BR:
tfo03016
]
BFO_0707 (rnr)
Enzymes [BR:
tfo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BFO_0707 (rnr)
Messenger RNA biogenesis [BR:
tfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BFO_0707 (rnr)
Transfer RNA biogenesis [BR:
tfo03016
]
Prokaryotic type
tRNA degradation factors
BFO_0707 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
S1CSD-TOTE-2
SAP_new25
Mnd1
Motif
Other DBs
NCBI-ProteinID:
AEW19955
UniProt:
G8UMY6
LinkDB
All DBs
Position
764170..766368
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AA seq
732 aa
AA seq
DB search
MKIKKKKDLTATKPNRKNDKKQQKASHIKRMKKEAIVQAVLNTFQLNPKAIYNYKQLSKS
IGIEAQVQKLYVADLLYDLTYDGILAEVEPGRFRLNSLGTVAVGIFQRRSNGRNAFLPED
GGEPIRVAERNSHHAMDGDKVRVQLFARRRGAEPEAEVMEVLENKKRTFVGRLQIAKDYA
FLVTEDKTLSNDIFIPREHLHGGRNNDKALVRIIEWPEGAKNPLGEVIDILGKAGDNNTE
MHAILAEFGLPYTYPEKVEEAANRIPTEITDEDRAGREDFRGVVTFTIDPKDAKDFDDAL
SLRKLENGLWEVGVHIADVTHYVKPGSIIDKEAYERATSVYLVDRTIPMLPESLCNNLCS
LRPNEEKLTFSVIFEMNDEAEILASRIGRTIIESDRRFTYEEAQNVIETGQGDYKDEVLT
LHHLAQQLRNIRFASGSIDFDRYEVKFEIDEKGKPLNVYFKESKEANKLIEEFMLIANRA
VAESMGKQPKGKTKKTFVYRVHEQPDPEKMKNFAGFIRRFGYKLKTDGSKSELTKGINNL
LDKAQGKPEENLIETLAIRSMQKARYSTENIGHYGLAFPYYSHFTSPIRRYPDMMAHRLL
ERYATGGRSVEKDRYEEYCDHCSQMEQIAANAERASVKYKQVEFMSDKIGRVYDGVISGV
TEWGLYVELNENKCEGLVPIRDLDDDFYTFDEENYALVGRRRKRTYRLGDPLTVKIAQAN
LERKQLDFVIAE
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgaagattaaaaaaaagaaagacctgacggccacaaagccgaatcgaaaaaacgacaaa
aaacagcagaaagcttcgcacatcaagcgaatgaagaaagaagccattgtacaggccgtc
ctgaacacctttcaactgaatccgaaggcgatttacaactataaacaactcagtaaatcc
atcggcatcgaagcacaggtgcagaagctttacgttgccgatctgctctatgacctgacg
tacgacggtattttggccgaggtagagccgggacgtttccgcctcaacagcctcggtacg
gtagccgtaggcatcttccagcgacggagcaacggccgcaacgcgttcctgcccgaagac
gggggcgaaccgatccgcgtagccgaacgtaactcgcaccatgcgatggacggcgacaag
gtgcgtgtgcagctttttgcacgtcgcagaggagccgaaccggaagccgaagtgatggag
gtgctcgagaataagaaacgtacgttcgtcggacgattgcagattgccaaggactatgcg
ttcttagtgacggaagacaagactttgtcgaacgatatctttatcccgcgtgaacatttg
cacggcggacggaacaacgacaaggctttggtacgcatcatcgagtggcccgaaggtgcc
aagaatccgttgggcgaagtcatcgatattctcggcaaagccggcgataacaatacggag
atgcacgccattctggccgagttcggcctgccctacacgtatccggaaaaggtggaagaa
gcggccaaccgcattccgaccgagatcaccgacgaggaccgtgccgggcgcgaagatttt
cgcggcgttgttaccttcaccatcgatccgaaagatgcgaaggactttgatgatgcgctg
tcgttgcgcaagctggagaacggcctttgggaagtcggcgtacatattgccgacgtgacg
cactatgtaaaacccggcagtatcatcgacaaagaggcttacgaacgtgcaacgtccgtt
tatcttgtcgaccgcacgattcccatgctccccgaatcgctttgcaacaacctttgctcg
cttcgtccgaatgaggagaaactgactttttcggtcatcttcgagatgaacgatgaggcc
gagattctggcttcgcgcatcggacgtacgatcatcgaaagcgatcgccgctttacgtat
gaggaggcacagaacgtgatcgaaacgggtcagggcgattacaaagacgaggtcctgacg
ctccatcatcttgcgcaacagttgcgaaatatccgttttgcaagcggctcgatcgacttc
gaccgatacgaagtgaagttcgagatcgatgaaaaaggaaagccgctcaacgtttacttt
aaagagtcgaaggaggcgaacaaactcattgaggagtttatgttgattgcaaaccgtgcc
gtggccgaatcgatgggtaaacaacccaaagggaagaccaagaagacgtttgtctaccgt
gttcacgaacagcctgatccggagaagatgaagaattttgcagggtttatccgtcgcttc
ggctataaattgaaaacggacgggagcaagagcgaattgacgaaaggcatcaataacctg
ctcgataaagcgcaagggaagcccgaagagaatctgatcgagacgctggctatccgctcc
atgcaaaaagcccgttactcgaccgaaaatatcggtcattatgggttggcgttcccatat
tattcgcatttcacctcgcccatccggcgatatccggatatgatggcacaccgtctgtta
gaacgctatgctacgggcgggagaagtgtggaaaaagaccgctacgaggagtattgcgac
cattgctcgcagatggaacagattgcggccaacgccgagcgtgcatccgtcaaatacaaa
caggtagagtttatgagcgataagatcggccgggtctacgacggtgtcatctcgggcgtg
acggaatgggggctgtatgttgaactgaacgaaaacaaatgcgaagggttagtgcccatc
cgcgacttagacgacgatttctatacgttcgacgaagaaaactatgcgctcgtaggccgg
aggcgcaaacgcacatatcgtctcggtgacccgctgactgtgaaaattgcacaggccaac
cttgaacgcaaacagcttgatttcgtcatagcggagtaa
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