Tannerella forsythia: BFO_2123
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Entry
BFO_2123 CDS
T01682
Name
(GenBank) YmdA/YtgF family protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
tfo
Tannerella forsythia
Pathway
tfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFO_2123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfo03019
]
BFO_2123
Messenger RNA biogenesis [BR:
tfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BFO_2123
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
Cas3_HD
LapA_dom
G3P_antiterm
Fez1
Motif
Other DBs
NCBI-ProteinID:
AEW21707
UniProt:
G8UHZ6
LinkDB
All DBs
Position
2275946..2277475
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AA seq
509 aa
AA seq
DB search
MNWIWMMIAFFVGGLLAWIVMTFLAKSRRTALLREMEKEAEVMKKNKMLEVKEKFLQLKT
DLEKQVTARNAKIQSGESKLKQREMALTQRQEELQRKMSEVDIVKENLNNQLQVIEKRKQ
DMEKLHQQEIVHLETISGLSADEAKERLIESLKDEAKTDASSYVNEIMEEAKMTANMEAK
KIVIRTIQRVATETAIENSVTVFHIDSDEIKGRIIGREGRNIRALEAATGIEIIVDDTPE
AIVLSGFDPVRREVARLALHQLVQDGRIHPARIEEVVNKVRKQVEEEVVETGKRTAIDLG
IHGLHPELIRMIGKMKYRSSYGQNLLQHARETANLCAVMAAELGLNPKKARRAGLLHDIG
KVPDDEPEMPHALYGAKLCEKFKEKPDICNAVGAHHDEMEMQTLLAPIVQVCDAISGARP
GARREIVEAYIKRLNDLEQLALSYPGVLKTYAIQAGRELRVIVGADKITDKDTESLSTEI
AKKIQDEMTYPGQVKITVIRETRAVSYAK
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaattggatatggatgatgattgcttttttcgtgggggggctgttggcctggatcgta
atgacattccttgcgaaatctcgccgcacagcactcctccgagagatggagaaggaagcg
gaggtcatgaagaaaaacaaaatgctggaagtaaaagaaaagttcctgcaattgaaaaca
gatctggagaaacaggtcacggcacgtaatgccaaaatacagtcgggcgaatcgaagtta
aaacagcgcgaaatggcgctcactcagcgtcaggaggaattgcagcggaagatgtcggag
gtcgatattgtcaaggaaaacctgaataaccagctgcaagtcattgagaaaagaaaacag
gatatggagaaattgcaccagcaggaaattgtccatctggaaacaatctccggcctgtcg
gccgatgaggccaaagaacgcttgatagaatcacttaaggatgaggctaaaacggatgct
tcctcttatgtgaatgaaatcatggaagaagccaagatgacggctaatatggaagcgaaa
aaaatcgttatccgtacaatacaacgcgtggcgaccgagacggcgattgaaaattcagta
acggtattccacatcgattcggacgaaatcaaaggacgaatcatcggacgcgaaggccgt
aacattcgcgctctcgaagcggctaccggcatcgaaatcatcgtagacgatactccggaa
gccatcgtactttccggctttgacccggtgcgtcgtgaagtcgctcgtctggctttgcat
cagttggtgcaggacggacgtattcatccggcacgtatcgaagaggttgttaataaggtg
cgcaaacaagtggaagaagaagtggtggaaaccggaaagcgaacagcgatcgaccttggt
atccacgggttgcatcccgaactgatacggatgatcggaaagatgaagtatcgttcgtcg
tacggacagaacctgctgcaacatgcgcgtgagacggcgaatttgtgtgccgtcatggcg
gcggaactgggactgaacccgaaaaaagcgcgtcgcgccggattgttacatgacatagga
aaagtgcctgatgatgagcctgaaatgccgcatgctctctatggtgcgaaattgtgtgag
aaatttaaggagaaaccggacatttgtaatgcggtgggcgctcatcacgatgaaatggag
atgcagaccctgttggcgccgatcgttcaggtatgtgatgctatttcgggagcgcgtccg
ggagcacgtcgcgagattgtggaagcatatatcaaacgcctcaatgacttggaacaattg
gccctttcgtatccgggagttttaaagacgtatgccattcaggccggtcgcgagttgcgg
gtgattgtcggtgccgataagattaccgataaagatacggaaagcctctcgaccgagatt
gccaagaagattcaagacgagatgacgtatcccggtcaggtgaagatcaccgtgattcgc
gaaacgcgtgctgtcagctatgcaaaataa
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