Tannerella forsythia: BFO_2829
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Entry
BFO_2829 CDS
T01682
Name
(GenBank) putative DEAD-box ATP-dependent RNA helicase CshA
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tfo
Tannerella forsythia
Pathway
tfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFO_2829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfo03019
]
BFO_2829
Enzymes [BR:
tfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BFO_2829
Messenger RNA biogenesis [BR:
tfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BFO_2829
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Utp25_C
Cas3-like_C_2
ERCC3_RAD25_C
SMC_N
Motif
Other DBs
NCBI-ProteinID:
AEW22443
UniProt:
G8UNA6
LinkDB
All DBs
Position
complement(2859326..2860639)
Genome browser
AA seq
437 aa
AA seq
DB search
MRFDELNLGDAVLDGLEAMNFQEMTPIQELSIPPILEGKDIIGCAQTGTGKTAAYVLPII
SKLNDGNYPQDAVNAVIMVPTRELVQQIDQQIDGFTYFVPVSAVAVYGGTDGIAYAQQER
GLQMGSDIVIATPGRLISHLNMGSVDLSQTSFFVLDEADRMLDMGFYDDIMQIYKKLPHD
CQIIMFSATMPPKIRTLAQNILKEPEEIKIAISKPPASIMQTAYICYEAHKMPIIKQLFS
KKQPERVIIFSSSKMKVKELTAALKRLHFNVAAMHSDLEQSEREQVMKEFRNGRIGVLVA
TDVVARGIDINDITLVINYDIPNDPEDYVHRIGRTARGTDGKGLAITFVSQQEQAKFKEI
ETFLEKEIYKIPLDADLGEAPAYEPEKYSRSRSRSRGGQSSHGNRHRKSGGQQQGNLSSR
PKGNRRRNKPSQNRLNG
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgacgaactgaaccttggtgatgccgtattggatggtctggaggctatgaac
ttccaagaaatgactcccatacaagaactttccattcctccgatattggaaggaaaagac
attatcggatgtgcccagacaggtaccggaaaaacagccgcttatgtgctgcccatcatc
agtaagctgaatgatgggaactatccacaggatgccgtcaatgcggttattatggtacct
acccgtgagctggtacagcagatcgatcagcaaatcgatggtttcacctactttgttccg
gtatcggctgtggccgtttatggaggaaccgacggcatcgcctatgctcaacaggagcgc
ggtctacagatgggaagcgacattgtgattgcaacccccggacgtcttatcagccatttg
aatatggggagtgtcgacttgtcgcagacgtcattctttgttcttgatgaagcagaccgg
atgctcgatatgggattttacgatgacattatgcagatttataagaaacttccgcatgat
tgtcaaattattatgttttcggctacgatgcctcctaaaatccggaccttagctcagaac
atcctcaaagaaccggaagagatcaaaattgccatttccaagccgcccgcctctatcatg
cagacggcatacatctgctacgaagcacataaaatgccgatcataaagcaattgttctca
aaaaaacaacctgaacgcgtcattatcttttcatcgtcgaagatgaaagtgaaggaattg
accgccgcgctcaaacggcttcacttcaacgttgcggcgatgcattccgacctggagcaa
agcgagcgtgagcaggtgatgaaagaattcaggaacggacgtatcggagtacttgttgca
acggatgttgttgcacgcggtatcgatatcaatgacattacacttgtcatcaattatgat
atacccaatgacccagaagattacgtacaccgtatcgggcgtacggctcggggaacagac
ggcaaaggactggcgatcacgtttgtctcacagcaggagcaagcgaaattcaaagagatc
gagacgtttttggagaaagaaatttataagatcccgcttgatgccgatttaggcgaagcg
cctgcatacgagcctgagaaatacagccgttcacgttcgcgtagtcgaggcggacagtca
tcacatggcaatcgccatcggaaaagcggagggcaacagcaaggcaacttatcatcacgt
ccgaaaggtaatcgacgacgaaacaaaccttcacaaaaccgactgaacggataa
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