Thermanaerosceptrum fracticalcis: BR63_14375
Help
Entry
BR63_14375 CDS
T06762
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tfr
Thermanaerosceptrum fracticalcis
Pathway
tfr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BR63_14375 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfr03400
]
BR63_14375 (mfd)
Enzymes [BR:
tfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BR63_14375 (mfd)
DNA repair and recombination proteins [BR:
tfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BR63_14375 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
Cas3-like_C_2
SNF2-rel_dom
AAA_16
UB2H
MFD_D3
SecA_DEAD
RecG_dom3_C
DUF3638
AroM
Motif
Other DBs
NCBI-ProteinID:
QNB48448
UniProt:
A0A7G6E8P4
LinkDB
All DBs
Position
2842917..2846450
Genome browser
AA seq
1177 aa
AA seq
DB search
MQSIIAHLKKIKEFNYLLEQLKKGRETFVYGVAGSQKTLLTAALLVDQEKPLLYIVENPQ
RGKEVFDDLNNLLPDWLIQYFPAFETLPFEVIAQSHETQRKRLEVLQNLVTNGKKHVVIS
TWEALIKTLMAPENFKRAIVNLTVGERVQIDQLLQHLISVGYQRVDMVEDKGQVSLRGGI
LDIFSVTAEQPYRIEFFDDEIDSIRVFSIESQRSIDKIKEVTIAPAAEFFLWGHDTEEAL
MHLQAEAQQLLKSMEKRGNIDGFNYLTARMKEILEKIRENQYFPGFEQLQPYFTQGKYSL
LSYFREDPFIILDEPNRQREAALAREKEHQETYVALLEKGKVLPGQAANYFSWDELWETM
KKRRPLFFSLLPKKPVGSESVNLVGVTAKTPSLFMGKTKLLADELKEWKRQKYGVLILVN
SEERAERLKQSLWDSGVEVSIAKRGSPLSLENITVSFGYLTSGFEFTTWKVVVLTEHEFY
HQPKKRPPRKMFQEGKKVTVLEDLKLGDYVVHINHGIGRYMGIEKLAVGDAERDYLVIKY
QGEDKLYVPTDQVGLLQKYFSQEGQVPKLSKLGGNEWNKVKSKVKAAVKDLAEELLNLYA
VRESARGFAFSPDTPWQMEFEDAFPYEETEDQLRAIREVKRDMEKPRPMDRLLCGDVGYG
KTEVAIRAAFKAVTDGKQVAVLVPTTVLAQQHYNTFKERFEGFGVNVAVLSRFRSAKEQK
AALQELARGRVDIIIGTHRLLSTDVKFKDLGLLIIDEEQRFGVVHKEKLKKIRKTVDVLT
LTATPIPRTLHMSLVGVRDMSVIETPPEDRYPVQTFVVEFSPQLVREAIRRELGRGGQVY
YVHNHIEDIEKAAHFVQDMVPEARVGVAHGKMSEDQLENVMLDFMEGELDILVCTTIIET
GLDISNVNTLIIDDADRLGLSQLYQLRGRVGRSNRVAYAYLTYNKDKILSEVAEKRLNAI
REFTELGSGFKIAMRDLEIRGAGNILGAEQHGHVAAVGFDLYCRMLEDAVKEARGEELPI
EKTISIDIQVKAYIPQEYIPDTGVKIDFYQRINAIKEVKEIDQLAEELEDRFGDMPEPLV
NLLRIAAIKISAVPAKIQSITQEKDLIKIKMEDDHGLTGNQLMSLARRYRRQVSFSAAAG
LEIVVNIRNLERKQMLLFLEEIILEISSLARKEAALV
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
ttgcaatccatcattgcacatctcaaaaaaattaaagaatttaattatcttttggagcaa
ttgaaaaaaggcagggaaacttttgtttacggtgttgccggttcccagaaaaccctgctt
acagctgctttactggttgaccaggagaagcccctgctttatatcgtagagaatccccag
cggggtaaagaagtgtttgatgatttgaacaatttattacctgactggttgatacagtat
ttccctgcctttgagactttaccctttgaggtcatagcccagagccatgagacccagcgc
aagcggctggaagtgctgcaaaacctggtgacaaatggcaagaaacatgtggttatctct
acctgggaggccctcattaaaaccttgatggcacctgaaaattttaaaagggctatagta
aaccttacagtaggggaacgggtgcagattgaccagctcttacagcacttgatcagtgtg
ggttaccaaagggtagatatggtggaggacaaagggcaggtctctttgcggggggggatc
ctggatattttctccgttacggcggaacaaccctaccggattgaatttttcgacgacgaa
atagattctatccgggttttctccatagaaagccagcgctctattgacaaaataaaagaa
gtgacgattgcccccgccgctgaattcttcctttggggacatgatacggaagaggcgctc
atgcacttacaggctgaagcccagcagctcttaaaatccatggaaaagcgggggaacata
gacgggtttaactatctgaccgccaggatgaaggaaattctggaaaaaatcagggagaac
cagtatttccccggttttgaacagctgcagccttatttcacccagggcaaatactccctt
ttatcctatttcagagaggatccctttatcattttggatgagcccaaccggcagagggag
gctgccttagcccgggaaaaagaacaccaggaaacttatgtggccttattggaaaaaggg
aaagtattaccgggtcaggccgctaattatttctcctgggatgaattatgggaaactatg
aaaaagagaagacccctatttttttctttactccccaaaaaaccggtgggatccgaaagc
gtcaacctggtaggtgttaccgccaagacccccagtttatttatgggtaagactaaactc
ctggctgatgaattaaaagagtggaagagacagaaatatggtgttttaatcctggtaaac
tctgaagaaagggcggagaggttaaaacaaagcctctgggatagcggtgtggaagtttct
atcgcgaaaagaggatcccccttatccttagaaaatatcaccgtcagttttggttatctc
accagcgggtttgagtttaccacctggaaagttgttgttctcacagaacatgaattctac
caccagcccaagaaacgcccacctcgcaagatgttccaggaaggtaagaaggtaactgtc
ctggaggaccttaaacttggggattatgtggtccatattaatcacggtattggccgctac
atgggcattgaaaaactggctgtgggcgacgcggaaagggactacctcgttatcaaatac
cagggtgaagataaactgtatgttcctaccgatcaggtagggcttttgcagaagtacttc
agccaggaggggcaggtgcccaagctttcaaagctggggggcaatgaatggaataaggtt
aaaagcaaagttaaggctgcggtaaaggatttggccgaagaattgttaaatctttacgct
gtacgagagtcggcccgcggttttgcttttagtcccgatacaccctggcagatggaattt
gaagatgccttcccttacgaagagacagaggaccagctgcgggccatccgggaagtgaaa
cgcgacatggaaaagccccgtcccatggatagactcctttgcggtgatgtaggttatggg
aaaacagaggtcgctatccgggcagcctttaaagccgtgaccgatggaaaacaagtagcc
gtcttagtccccactacggtcttagcacagcagcactacaatacctttaaggaaagattt
gagggttttggtgtaaatgttgccgtcctaagccgcttccgttccgccaaagaacagaaa
gctgccctgcaagaactggcccgggggcgtgtggatattatcattggtacgcaccggctt
ttatccactgatgttaaatttaaagacctggggcttctgattatcgatgaggaacaacgt
tttggggtagtgcataaggagaagttgaaaaaaatccgtaaaacggtagatgttttaacc
ttaacggctacacctattccccggactttacacatgtctttagtaggagtaagggatatg
agcgtgattgaaacacctccggaagaccgttatcctgtgcaaacctttgtggtggaattc
agccctcaacttgtacgggaagcaatccgccgggagttaggccgtggtgggcaggtctat
tacgtgcacaaccatatagaggacattgaaaaggctgcccattttgtacaagacatggtg
ccggaggcccgtgtgggggtggcccacggtaagatgtctgaagaccaactggagaatgtc
atgctggatttcatggaaggggaactggatattctagtctgcacaaccattattgaaacg
ggcttggatatttctaatgtcaacaccttaattattgatgacgctgacagattaggacta
tcccagctttaccagctgcggggcagggtaggacgctccaaccgggtagcctatgcttat
ttaacttacaataaggataagattctgtcggaagtagccgagaaacgcctcaacgccata
cgggagtttacggaattaggttcaggttttaaaatagccatgcgagatttggaaatcagg
ggagcaggtaatatcctgggtgccgagcaacatgggcatgtggccgctgtaggttttgat
ttatactgccgcatgttggaagatgcggtcaaagaagcccggggcgaggaattgcccata
gaaaaaaccataagcattgatattcaggtaaaagcttacatccctcaggaatatatccct
gataccggcgtcaaaattgatttttatcagagaattaatgccataaaagaagtgaaggaa
atagaccagctggccgaagaactggaggaccgttttggtgacatgcccgagcccctcgtc
aacttgctgcgcattgccgccattaaaatttccgctgtcccggcaaaaatccagtctatc
acccaggaaaaagatctgatcaaaattaaaatggaggatgaccacggccttaccggcaac
cagctgatgagcctggccaggcgttaccggcggcaggtcagtttcagtgctgcggccggt
ttagagattgtggtaaatatccggaacttggaaaggaaacagatgctcttattcttagaa
gaaattattttggaaatatcctcccttgcccggaaggaagcggctttggtataa
DBGET
integrated database retrieval system
