Thiorhodovibrio frisius: Thiofri_00384
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Entry
Thiofri_00384 CDS
T09561
Symbol
spoVD
Name
(GenBank) Sporulation-specific penicillin-binding protein
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
tfri
Thiorhodovibrio frisius
Pathway
tfri00550
Peptidoglycan biosynthesis
tfri01100
Metabolic pathways
tfri01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
tfri00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Thiofri_00384 (spoVD)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
Thiofri_00384 (spoVD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
tfri01011
]
Thiofri_00384 (spoVD)
Enzymes [BR:
tfri01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
Thiofri_00384 (spoVD)
Peptidoglycan biosynthesis and degradation proteins [BR:
tfri01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
Thiofri_00384 (spoVD)
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GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
WPL20304
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Position
complement(318750..320651)
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AA seq
633 aa
AA seq
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MVDSSFNKPRSGARIFTGRIILAGVLVVVCLATVVARLVYLQVYNNDHFRTLSEDNRVRV
EPLPPMRGLIYDRNGVLLADNVPSYSLQIIPGRVDNLADTIAELSEIIPISDLDRQRFER
LRRQHRRFDGVPIRLDLNDVERARFAVQGHRFPGVQIHAELLRHYPFSFDTAHVLGYVGR
INEEEMQRIDTSAYAGSSHIGKVGLEKAYEDSLHGSVGYQQVEVNARGRVLRTLEEQLPT
SGDDLVLFLDIDLQRDAMATMAGKRGAVVAIDPNTGGVLAMASTPGFDANLFVDGISVED
YAALRDSIDKPLYNRAVRGQYPPASTIKPFIGLGGLAAGSISFSDGKYCGGSFQLPGHGH
RYRCWRRGGHGTLTVKDAVVQSCDVYFYRLAHDMGIERLDRFLADFGFGSKTGIDFADEL
GGLLPTPEWKERVRGRPWYPGETLIVGIGQGAFLVTPLQLAAATAAMANHGTYFQPRMVR
AVREPGSGILQPTAPVSHRIAVDSEAKWEGMVDAMAQVVEGARGTARRIRSPNFRIAGKT
GTAQVFTIGQNERYNEAQVAERMRDHALFIAFAPVEAPQIAVAVIVENGRHGSSTAAPIA
RQIIDSYLLKKRVRPAEPATGTPDQSVDQIDED
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggtcgattcatcgttcaataagccacgcagtggtgcgcgcattttcaccggccgcatc
attctggccggcgtactggtggtagtctgccttgccaccgtcgtggcgcggctggtgtat
ttgcaggtttacaacaacgaccatttccgcacgctgtccgaggataatcgcgttcgagtg
gaacctttgccgccgatgcgcgggctgatctacgaccgaaatggggtgctgcttgccgat
aatgtcccgtcctactcgctgcagatcattcctggccgagtcgataaccttgcggatacc
atcgccgaactgagtgagatcatcccgatcagcgatctggatcgccaacgcttcgaacgt
ttgcgccgtcagcaccgccgtttcgacggggtgccgatccgactggacctgaacgatgtc
gagcgtgcgcggttcgctgtgcaggggcatcgctttccgggtgtgcagatacacgcggag
ttgctgcgccattatcccttctcgttcgatactgcgcatgtgcttggctatgttgggcgc
atcaacgaagaagagatgcagcgaatcgacacctcggcctacgctggctccagccatatc
ggtaaggttggtcttgagaaagcctatgaggacagcctgcacggaagcgttggttaccag
caggttgaggtgaatgcgcgcggtcgggtgctgcgcacattggaggaacaactgccaaca
tctggggatgacttggtgctgtttctcgatatcgacctgcagcgcgatgccatggcgacc
atggctggaaagcggggcgcggtggtggccattgatcccaacaccggcggtgtgctggcg
atggccagcacacctggcttcgacgctaatctgtttgtcgatggaatcagcgtcgaggac
tatgccgcgctgcgcgactctatcgacaagcccctttacaaccgggcggtgcgcggtcag
tatccgccagcttcgaccatcaagcccttcatcgggcttggcgggttggcagcgggttcc
atcagttttagcgatggcaaatactgcggtggctcttttcagctcccggggcacggtcat
cgctatcgctgctggcgtcgcggcggtcatggcaccctgacggtgaaggatgccgtggtg
cagtcctgcgatgtgtatttctaccgtctcgcgcacgacatgggcatcgaacggctcgat
cgcttccttgccgatttcggcttcggctccaagaccggcatcgactttgccgacgaactc
ggcggcttgctgccgacgcccgaatggaaggagcgcgtgcgtggtcggccctggtatccc
ggcgagacgctgatcgttggtatcggccaaggggcctttctggttacaccgctgcaactc
gccgccgcgaccgcagccatggccaatcatggcacttacttccagccgcgcatggtgcgg
gcggtgcgtgaaccgggctctggcattctgcagccaaccgcgccggtcagccatcgcatc
gcggtcgatagcgaggccaagtgggaggggatggtcgatgccatggcacaggtcgtggaa
ggggcgcgtggcacggcccggcgcatccgcagcccgaacttccgtatcgccggtaagacc
gggaccgcacaggtcttcaccatcgggcagaacgagcgctacaacgaggcgcaagtcgct
gagcgcatgcgcgatcatgcgctttttattgcattcgcgccggttgaggcgccgcagatc
gcggtggctgtgatcgtggagaacggtcgccacggcagctcgaccgctgcgcccattgcg
cgtcagatcatcgacagctacctgttgaaaaagcgggtcaggccggccgagccggcgact
ggcacgcctgaccagtcggtagatcagatcgacgaggattaa
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