Thiorhodovibrio frisius: Thiofri_00728
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Entry
Thiofri_00728 CDS
T09561
Symbol
recB
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
tfri
Thiorhodovibrio frisius
Pathway
tfri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tfri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Thiofri_00728 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfri03400
]
Thiofri_00728 (recB)
Enzymes [BR:
tfri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Thiofri_00728 (recB)
DNA repair and recombination proteins [BR:
tfri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Thiofri_00728 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
WPL20629
LinkDB
All DBs
Position
665922..669914
Genome browser
AA seq
1330 aa
AA seq
DB search
MGGSASDSVVGLDPLRFPLHGQRLIEASAGTGKTFTLALLYTRLVLGHGLDGCAFDRPLV
PPEILVVTFTDAATKELRARIRERLVEAADWFAAPADATPADALLGQMRADYPPDAWPGC
ARRLRQAADWMDEAMIVTIHSFCQRMLKEHAFATRGLFQRELVTDQSDLLLDALRDYWRM
HFYPLPAEQIACIQAVVDSPEALYQKLGDWIKRPDAQLSHSGQPVLPEDLRAPLAATCDQ
RQREAAAAELEEPARARWREHRKEVDALLYEIRDHLDGRSYPKKTVESFGTCLAELAQWA
DGGKTPDKIQRFAQEGFKFRGSAPVQQAPAHPAFQAIADWQAEVARVQAQSVAPDPPLAP
RLLAHAADWLSRELPRRLGQRAEMGFDDLLRDLDAALNPSTASLSDQTLAETLAATLRAQ
FPVALIDEFQDTDPLQYRIFERIYAQKTDAVQGDAPHKDAQSTALVMIGDPKQAIYGFRG
ADIHAYLAARQATRDQLYTLKTNYRSTQAVVDACNRLFEHAEQHDAGAFRFGSKEAPDDN
PIPYVRVKAAGRADQLLLDQQPAPAMTFWWLDGENGGPLGSPAYREAMAEVAASEIVRWL
QQAREDRAGFRTGNHWQPLRPRDIAILVRNRKEAAAMRDALAKRRVNSVYLSDRDSVFAT
AEAADVLHWLRACAQPRDEGLVRTALGTNTLALALDAFDHWQRDELAWEAQLERFRDYRQ
LWQHRGVLAALRRLMHDHDLPARLLAQPGGERSLTNLLHLSEWLQQAASNLDGEQALIRH
LSEHLGEGDSSDESILRLESDAELVRVITIHKSKGLEYPLVLLPFICSWRPVDGNARSVI
YRPDASMESLERFIEVAGNKVFPDAWEQADDARLSEDMRLLYVAATRARHALWLGIAPLK
NDSSKQPKLHRSAIGYALNGAQAFPTSAAVHQRLAQLTQGCDAIALLSAPEPDARCLTAE
DDETLDPAREPAHRPFAPWWISSYSALRLGMSAPPEDQEPAPGAETANQETALEEAALDL
TQTLVPRAEPVGGAAAQAQPPVAATASPAAGALHDFPRGSRAGTFLHGLLEWAGRAESSN
SQSGLGRGFAAAAASPPERREMLARRCTLRGLQGWTDPLNAWLGAMLSRSWILPQDAGRP
DSAPEPPGGKTGSELVLAELSPSDVQVEMEFWIQTRSVDIRRLDALVQQHCLAGESRPTL
HAGQLNGMLKGFIDLVFEHQGRFYVLDWKSNWLGPDNSAYTPEAMRGAILHHRYDLQYLL
YLLALHRLLGARLPDYDYDRHIGGAVYVFLRGAGAPSQGLFTDRPPRALIEALDGLFAGR
SAQSQEEDGE
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atgggtggctcagcgtccgattctgtcgttggcctcgacccgctgcgcttcccgttgcat
ggccagcgtctgatcgaagccagcgccggcactggcaagaccttcaccctggcgctgctc
tatacccggctggtgcttggccacggtttggacggctgcgccttcgaccgccccctggtg
ccaccggagattttagtcgtcacctttaccgatgccgccaccaaggagttgcgcgcacgc
attcgtgagcgcctggtcgaagccgccgactggtttgcggcccctgccgatgccacgccc
gccgacgccctgctcgggcaaatgcgtgctgactatccaccggatgcctggccgggctgc
gcccgtcgactgcgccaggcggccgattggatggacgaggcgatgatcgtcaccatccat
agcttctgtcagcgcatgctcaaggagcatgcctttgccacccgtggcctgttccagcgc
gaactcgtgaccgatcagtcggatctgctgctcgatgccctgcgcgattactggcggatg
catttctatcccctgccagcagaacagatcgcctgcattcaggccgtcgtcgactcgcca
gaagcgctgtatcaaaagctgggcgactggatcaaacgcccggatgcccagctgtcgcat
agcggccagccggtgctgcctgaggatctgcgcgcgcccctggccgccacctgcgaccag
cgccagcgcgaggccgcagcggcagagctggaagagccggctcgcgcccgctggcgtgag
catcgcaaagaggttgatgccctgttgtacgagattcgtgaccatcttgacgggcgcagc
tatcccaaaaagaccgtggaatcttttggtacatgcttggctgaacttgcgcaatgggcc
gatggtggcaagacgcccgacaagatccagcgcttcgcgcaagaggggttcaagttccgg
ggcagtgcgcctgtccaacaggctcccgcgcatcccgcctttcaggccatcgccgactgg
caggccgaggttgcgcgggtgcaagcccaatccgtcgcgcccgatccgccgctggcgccg
cgtctgcttgcgcatgctgccgactggctgagccgcgagttgccgcgtcggctcggccag
cgagccgagatgggcttcgacgatctgctgcgcgatctggacgctgcgctcaatccgtca
acggccagcttaagcgatcaaactctggccgagacgctggccgcgaccctgcgcgcgcag
ttcccggtcgccttgatcgatgaatttcaggacactgatccgctgcaataccgtattttc
gagcgcatttatgcgcaaaaaaccgatgcggtacagggcgatgcgccacataaggatgcg
cagtcgacagcgctggtcatgatcggcgaccccaagcaagccatctacggttttcgcggc
gccgacattcacgcctatctcgccgcgcgccaggccacgcgcgatcaactctatacgctc
aagaccaactatcgctccacccaagccgtggtcgatgcctgcaacaggctgttcgagcac
gcggagcagcatgacgccggtgcgtttcggtttgggtccaaagaggcgccggatgacaat
cccattccctatgtgcgggtgaaagccgccggtcgcgccgatcaactcctgctcgatcaa
caacccgcgccggccatgaccttctggtggctcgacggcgagaacggcggtccgctcgga
agccccgcctatcgcgaggccatggccgaggtggcagcctcagagattgtgcgctggctg
caacaggcgcgtgaagaccgggccggttttcgcaccgggaatcactggcaaccgctgcgc
ccgcgcgacattgctattttagtgcgcaaccgcaaggaagcagcggccatgcgcgacgcc
ctggccaagcgtcgggtcaatagtgtctatctgtcggatcgtgactcggtgttcgcaacc
gcagaggctgctgatgtgctccattggctgcgggcctgcgcgcaaccccgggatgagggc
ctggtgcgcaccgcgcttggcaccaataccctggccctggcgttggatgctttcgaccac
tggcagcgcgacgagttggcctgggaagcgcaactcgagcgctttcgcgactatcggcaa
ctgtggcagcaccggggcgtgctggccgcgctgcgtcggctaatgcacgatcatgacctg
ccggcacgtctgttggcgcagccaggaggcgagcgcagcctgaccaatctgctgcatctg
agcgagtggttacaacaggcggccagcaatctggatggggaacaggcgctgattcgtcat
ctgagcgagcacctcggcgagggcgactccagcgatgagtccattctgcgcctggaaagc
gatgctgaattggtccgcgtgataaccattcacaaatccaagggactggagtatcccctg
gtgctcttgccctttatttgcagttggcgcccggttgacggaaatgcgcgcagcgtcatt
tatcggccagatgcgtccatggaatctctggagcgcttcatcgaagtggccggcaataag
gtctttccagatgcctgggaacaagctgatgacgcacgcctgagtgaagatatgcgcctg
ctctatgtcgccgctacgcgtgcgcgccatgcgctctggctcggcattgcgccgctcaaa
aacgatagcagcaagcagccgaaactccaccgaagcgccattggctatgctttgaacggc
gctcaggcgttcccgaccagtgcggccgtgcaccagcgcctagcccagctgacacagggc
tgcgatgccatagcgctgctgagcgctccggagcccgatgcacgctgcctgacggcggag
gatgacgaaaccctggacccggctcgcgagcccgcgcaccgtcccttcgcgccctggtgg
atttcgagttactcggcgctgcgcctgggcatgagcgcgccgcccgaggaccaggagcca
gcgccaggagccgagactgcgaaccaggaaaccgcgctcgaagaagccgcgcttgacctg
acccagacgctcgttccgcgcgctgagccggtaggcggtgctgccgcacaggctcaacca
cctgtcgctgcgactgcaagcccggcagcgggggcgctgcacgacttcccccgtggcagc
cgcgccgggaccttcctgcacggcctgcttgaatgggcagggcgcgccgagtcctcaaac
agccaatccggcttggggcggggtttcgcggctgcggctgcatcaccgcccgagcgccgc
gagatgctcgcgcggcgctgcaccctgcgcggacttcagggttggaccgatccgctaaac
gcttggcttggcgcgatgctgagtcgctcttggatcttgccccaggatgcggggcggcct
gacagtgcgcccgagccgcccggcggaaagacaggaagcgagctggtgctggccgaactt
tcgccatcggacgtgcaggtcgagatggagttctggattcagacccggtctgtcgatatt
cgccggctcgatgcgctggtgcaacagcattgcctggccggcgagtcgcgaccgacgctg
cacgccggccagctcaatggcatgctcaaaggctttatcgatttggtatttgagcaccag
ggtcggttttatgtgctcgactggaaatccaactggcttggccccgataacagcgcttac
accccagaggccatgcgcggcgccatcttgcatcaccgttacgatctgcaatacctgctc
tatctgctcgcgctgcaccggctgcttggcgcgcgcctgcctgactatgactacgaccgt
cacatcggcggtgccgtctatgtgtttttgcgcggtgcgggtgctcccagccaggggctt
ttcaccgaccgcccgccgcgcgccctgatcgaagcactcgatgggctctttgcggggcgc
agtgcgcagtcgcaagaggaggacggtgagtga
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