Thiorhodovibrio frisius: Thiofri_00802
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Entry
Thiofri_00802 CDS
T09561
Symbol
rnr_1
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tfri
Thiorhodovibrio frisius
Pathway
tfri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thiofri_00802 (rnr_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfri03019
]
Thiofri_00802 (rnr_1)
03016 Transfer RNA biogenesis [BR:
tfri03016
]
Thiofri_00802 (rnr_1)
Enzymes [BR:
tfri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Thiofri_00802 (rnr_1)
Messenger RNA biogenesis [BR:
tfri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Thiofri_00802 (rnr_1)
Transfer RNA biogenesis [BR:
tfri03016
]
Prokaryotic type
tRNA degradation factors
Thiofri_00802 (rnr_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
OB_RNR_1st
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
WPL20697
LinkDB
All DBs
Position
736771..739020
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AA seq
749 aa
AA seq
DB search
MARRKNSQSAKVLDPHREREARKYDNPIPSREFILETLTERGVPMDAAGVAKALSLSDPE
EQLALERRLGAMVRDGQLVRNRRDAFCLVNKKDLIAGRVIGHPDGFGFLKPDEGGDDLYL
YPKEMRALFHGDRIVARVTGRDRRGRLEGAVVEILERNTQSVVGRFYAESGVGFVVPDNK
RIPHDIIIPSDRAGAATKGQIVVAEITDQPTKRTQPLGRVLEVLGDHMAAGMETDIAIRA
HDLPVDWPEAVLQQISGLSEEVPEAAKAGRLDLRDLPLVTIDGADARDFDDAVYAERKPK
GWRLLVCIADVSAYVSPGDALDQEGRARGNSVYFPDRVIPMLPEVLSNGLCSLNPQVDRL
CMACELYVNRDGKVTRSRFFEAVMRSAARLTYEQVAAMLEGDAKLCDQYAQLLPHLHELH
QLFQSLLEARGERGAIDFDTVETQFVFNEQGRLEGIEPRTRNDAHRIIEECMLAANVASA
RLFERKKMPALFRIHEQPKAEKLSDLREFLAELGLNLPGGDKPTAKDYGTLLDLVRERAD
FHLIQTVLLRSMQQAMYSSDNVGHFGLAYEGYTHFTSPIRRYPDLIVHRIIKHILAGGSV
ADLDYSKPELQQIAEHCSGTERRADEATRDAADWLKCEYMRDKLGEQFDGTIVSVQGFGL
FVELDDVYVDGLVHITALDNDFYHFDPIGHRLNGARTGQVYRLGDRLRVQVAAVNLDERK
IDFVLAPADKKSEGAKRSRRRGSRKRAAS
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
gtggccagacgcaaaaactcccagtccgccaaagtgcttgacccacaccgcgagcgcgag
gcgaggaagtacgataaccccattcccagtcgtgagttcattctcgagaccctgaccgag
cgcggggtgccgatggacgccgcgggcgtggccaaggcgcttagtctgtccgaccccgag
gagcagctggcactcgagcggcgtctgggtgcgatggtgcgcgatgggcaactggtgcgc
aaccgccgcgatgccttctgcctggtcaataagaaggatctgatcgccgggcgggtgatt
ggccatcccgatggctttggcttcctcaagcccgatgagggcggggatgatctttatctg
tatccgaaggaaatgcgcgcgctcttccatggtgatcgcattgttgcgcgggtcaccggg
cgcgaccggcgcgggcggctcgagggtgcggtggtggagattcttgagcgcaatactcag
tcggtggtgggacgcttttatgccgaaagcggcgttggcttcgtggtgccggataacaag
cgtatcccccacgacattattatccccagcgatcgggcgggagcagccaccaagggccag
atcgtggtggccgagatcactgatcagcccaccaagcgcacccagccgctcgggcgggtg
ctggaggtgctcggcgatcacatggccgccggcatggagaccgacattgccattcgcgcc
cacgatctccctgtcgactggcccgaggcggtgctgcaacagatctctggcttaagcgaa
gaggtgccggaagcggccaaggctgggcgtctggatctgcgcgatttgccgctggtgact
atcgatggcgccgatgcgcgcgattttgacgacgccgtttatgccgagcgcaagcccaag
ggttggcggcttttggtgtgcattgccgatgtctctgcctatgtgagccccggggatgcg
ctggaccaggaaggccgtgcgcgcggtaattcggtctatttccctgatcgcgtgattccc
atgctgccggaggtgctctccaacgggctctgttcgcttaatccccaggttgatcggctg
tgcatggcctgcgagctctatgtgaaccgcgatggcaaggtgacccgttcgcgctttttc
gaggcggtgatgcgctcggcggcgcggttgacctatgagcaggtcgccgccatgctcgag
ggcgacgccaaactatgcgatcaatatgcgcagctgctgccccatctgcatgagctgcat
cagctgtttcagtcgctgctcgaggcgcgtggcgagcgcggtgccatcgatttcgacacg
gtcgagacccagttcgtcttcaacgagcagggccggcttgagggcatcgaaccgcgcact
cgcaatgacgcgcatcgcattatcgaggaatgcatgctcgcggccaatgtcgcctccgcg
cgcctgttcgagcgcaagaagatgccggcgctgttccgtattcacgagcagcccaaggcg
gagaagctctccgacctgcgcgagttcctcgccgaattgggcctgaacctgcccggtggc
gacaaacccaccgccaaggactatggcaccttgttggatttagtgcgcgaacgggcggat
tttcatttgatccaaaccgtactgctgcgctccatgcagcaggccatgtacagctcggac
aatgttggtcactttggcctggcgtacgagggctatacccatttcacctcgcccattcgc
cgctatccggacctgattgtgcaccgcatcatcaagcatattctggcgggtggcagcgtg
gcggatttggactactccaagcccgagttacaacagattgctgagcactgctcgggcacc
gagcggcgcgccgacgaggccacccgcgatgccgccgactggctgaaatgcgagtacatg
cgcgacaagctcggcgagcagttcgacggcaccattgtaagcgtccagggctttggcctg
ttcgtcgagctcgacgatgtttatgtcgatggcctggtgcacattactgcgctggataac
gacttctaccacttcgaccccatcggccaccgactcaatggcgcacgcacgggccaagtc
tatcggctcggcgaccggctgcgggtgcaggtggcggcagtcaatctcgatgagcgcaag
atcgacttcgtgctggcacccgcggacaagaagtccgagggcgccaagcgctcccgccgt
cgcggcagccgtaaacgcgccgctagctga
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