Thiorhodovibrio frisius: Thiofri_01239
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Entry
Thiofri_01239 CDS
T09561
Symbol
lgrD
Name
(GenBank) Linear gramicidin synthase subunit D
Organism
tfri
Thiorhodovibrio frisius
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
Condensation
NAD_binding_4
PP-binding
Epimerase
AMP-binding_C
GDP_Man_Dehyd
3Beta_HSD
AAA_25
Motif
Other DBs
NCBI-ProteinID:
WPL21131
LinkDB
All DBs
Position
complement(1232989..1240350)
Genome browser
AA seq
2453 aa
AA seq
DB search
MRFDTFNLTETQMALLESSDQGGNRCAVFRLEGKVDKERLATAVQRVIAQCPPFRYRVEQ
IDGHPRILLTKEAAAAAPERDQPGLQIIATDGGEAAAFALIENMLNRRLRLNSGTPYLFA
LVQGAKAAYLVFVCHPLILDRFSLRPLFRALSAAWRGETLPDDLALPQPLLLSEEAARTA
DPDRYGESLRFWTGLLRDTAFEWRPPPLEAHLDDSLFSLTLSYQARDRMSRLATDLGIGL
DHLLVFAFHLFLFRLTRSENVLTAYRHRVRTGAPEQIGFNENVAFFRSLLVGDLTGDQAG
HQTGEQTLGSFLRRAARLFMQASHFSDMPMREVLRELQRADPDFKPTNVLFDEDPLPHGE
LVLEGLTVTLLSSLSHQWESEDIAIYFDLRDTLELNVLARAPQDLPGLKMALAHFLVLLE
HLPDELDRPLTTTMLFTETLRQQAVGLAQSQPPVVRAEDVLNHFLATCNQQPEAPALRFG
ERVLSYQALAQAAGAVAAGLDALDIEAREPLIGLCLERSERMIAAIFGVLGADAGYVPLD
PSMPAERLGFIAADAGLGAVITDAATRATIAPPDGDPIVDCPVLDIDQLLATPPRDLTPA
APESLGQIAYVIYTSGTTGTPKGVAIERGMLAHFIAALEGIWDRGPGTRWMQFASVNFDA
SVLEIFNPLTHGGELVVVPSSARTDALAIEALMREQRVTHAFLPPALLRLLPRRPLPDLI
AIFSGGEAADEDTVHFWSKTVELANIYGPTETTVMATINRMGGDKAANNLGHPLRGYDTY
LLDERGQLSPLGGVGEICIGGAAVARGYLGRPELTAKKFIPNPFGPGRLYRTGDLGRYRP
DGELEFLGRSDFQVKVRGFRIELGDIEHAIAEQPEISGVYVGAFEVQGSKALIAWYVSTE
LKPDALRTRLEAKLQRYMVPSYLIPLEAFPLNISGKIDRTRLPMPGADDATVAASQDVDA
LEHLVRETWSKALGVAPAKFAPDSHFFHLGGHSLLVVQVCLHLSEALGSNIRPKQLFEHP
LLGEFCDLLRGAPAGANANPLPPLVATGKTRAPVLNRLIGLIQSRALRLPEDNTYNIVVR
IDFSAEINPLQLRTATTELLAAHPVFRACFAEQDGQLYIQIPEPAAKDDQPLVALHDSSN
EGIHARTETLRHQPLGIDSAPLWRAELHVSTAGTCSLVFCIHHAIFDGWSFNLFLDELGE
RYLRHPVPERLNIFDYCDWSRCLPKSPPFAESIAYWKHKLGGADAHTELPIDQNPGNPNE
SPDTNQALALRFAPETVAALKAFADEAGITMSPLLFALYLVWIWRLTGQRELVCAYPYAG
RDIAGTEHIYGMFVTMGFLRQTLDPRASFGELATAVHRQMLDDKDHLLATPYDAEIAGLE
SLNLIFSLQSGIGLEGSFGEVGFKADELPAATAKADLTGIFYQSLDGAIEGRLEYDSSRF
HPETVSGFLDTYQSLVEAAARAPQSRVNELAYQSDADLSRFMGFACGPRLELPPSTIPAR
FASVAARAPEAPAVLFEGRSLSYQALAELSDRIASGLLRRLAPGSRVGLSMHKSDTLVAT
LLGILKAGCAYVPLDPSYPPERLRFFAENAGVTHVAADAPSREALTEIGLGGLRFFDPDQ
DLAPSAGEQPKVGPETLAYIIHTSGSTGQPKGVMIEQHNLVHFAVSAAAAMQLEAGSVVA
LIASMNFDASVLEIFPALLNGHTLAVVPEDARKEPALLHRTIGELGVTHTIMSPVVLRNL
PHEPLPALRMLGFGGDVIDQQTADWWSRQTRFLSMYGPTETTVMASLGEIAPGANARIIG
RPLPGYRLYLLDRDHQPVPQGAVGEICIGGEGLARGYLNRDDLTVERFVLDPFGGSPYAR
MYLTGDLGRFLPDGTIEFFGRNDAQIKVRGFRIELGEIENSLASFPGIKQVVCAAKGEGE
NRYLAAYYLADSDLCESALRKHAGEFLPDYMIPSFFVRLSALPVSPSGKIDRKALPAVAG
KESQNPPQEGAERQIADIWEDLLHYHGIDRDDSFFNVGGNSLLAVRMQAAVEKKLGLEFS
ISDFYRAPTIAALAAGQQQDFIAQAVADAEAELLVAEPAQHPQDPMAAPQSILLTGARGF
LGIFLLAELTRRCEHVHCLLRCDNKAAGLAALRKQAAEAGVDPDFARVIIVPGDLGEPGL
GLSDEAHARLASDIDAILHCGAFVHHLYSYATMKPINVGGTEALLALALSGRQKPFCYVS
TITVGASLTDVDRIAEDVLPNAPAVDNGYILTKWVGEQRIARAVRKFGLPAVIARPGNIT
GSSASGYSNYHNNHFWRFTKGCLQLGAYPDIPMPIEMMPVDHLAAAIAALATRAPEPPES
QSRLLVANLANPTSLSLGDFFAQLSAAGYPAQAEPATAWQKRLSHLAPDNALSQIKDFYT
GDLSGEAPPTEQQQTLAALQAAGASLDADYDALIPLYASYLERSGWIVRSGAD
NT seq
7362 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttcgataccttcaacctcaccgagactcaaatggccctgctggaatcgagcgac
cagggtggcaaccgctgcgcggtgtttcggctggaggggaaggtcgacaaggaacgactg
gccacggctgtgcaaagggtcattgcacagtgcccgccctttcgctaccgggttgaacaa
atcgacgggcacccgcgcattttgctcaccaaggaggcagccgcagctgcgcccgagcgc
gaccagcccggactgcaaattatcgcaaccgacggtggcgaggcagcggccttcgcgctg
atcgagaacatgctcaaccgccgcttgcgcttgaacagtggcacaccctatttgttcgcg
ctggtgcagggagccaaagccgcctatctggtgttcgtctgccatccgttgatccttgac
cgcttctcgctgcggccattgtttcgcgcgctatccgccgcttggcgcggcgagaccctg
cccgatgacttggccctcccccaacccctgctgctgagcgaagaagcggctcgcaccgcc
gatccggaccgctacggggagagcctgcgtttctggaccggactactgcgcgacacggcc
tttgagtggcgcccaccaccgctggaagcccatctcgacgacagcctgttcagcctgacg
ctgtcctatcaggcccgtgatcggatgagccggttggcgaccgatctcggcatcgggctc
gaccatctgctggtgttcgcctttcatctgtttctattccggctgacgcgctcggaaaac
gtgctgaccgcctaccggcatcgcgtgcgcaccggcgcgccggagcagattgggttcaat
gagaatgtcgccttcttccgcagcctactggttggtgacctgacgggtgaccaagccggt
caccaaactggcgagcagacattgggaagcttcctgcgccgggcagcgcggctgttcatg
caggccagtcacttttccgatatgccgatgcgcgaagtgctgcgcgagttacagcgagcg
gacccggacttcaaaccgaccaatgtgcttttcgacgaggacccgctgccccacggagag
ctggtactcgagggcctgacggtgaccctcctgtcctccctgtcccaccaatgggaaagt
gaagacatcgctatttacttcgacctgcgcgacaccctggagttaaacgtgctcgcgcgc
gcgccgcaggatctgcctggtctcaaaatggcgctagcgcatttcctggtgctactggag
catcttccggatgagctcgatcgtcccctgaccacgaccatgctgttcaccgagacgctg
cgccagcaagcagtcgggctggcgcagagtcagccacctgttgtgcgcgccgaggatgta
ctcaatcactttctcgccacctgcaaccagcagcccgaggcacccgccctgcgctttggc
gagcgggtgctgagctatcaggcgctggcacaagcagccggtgcagtggccgccgggctc
gacgcgctggacattgaagcacgcgagccgctgatcggcctgtgcctggagcgcagcgag
cgcatgatcgcggccatctttggcgtactcggggccgatgccggctatgtgccgctcgac
ccgagcatgccggccgagcgcctcggcttcatcgccgccgatgccgggcttggcgccgtt
atcacggatgccgcaacgcgcgccaccatcgcgccacccgatggcgaccccattgtcgac
tgcccggtgctcgatatcgaccagttgctggccactccgcctcgggatctgacaccggcc
gcacctgagtcgctcggccagatcgcctatgtaatctatacctccggcaccaccggcacg
cccaagggagtcgccattgagcgcggcatgctggcgcatttcatcgccgcactagaaggc
atctgggatcgcgggccggggacacgctggatgcaattcgcctcagtcaacttcgatgcc
agcgtgctggaaatcttcaatccgctcacccatggtggcgagctggtggtggtgccaagc
agcgcccgcaccgacgccctggcgatcgaagccctgatgcgcgagcagcgtgtcacccac
gccttcctgccgccggccctgctgcggctgctgccgcgacggccgctgccggatctgata
gccatcttctccggcggcgaggccgccgatgaggacacggtgcatttctggtcgaagacc
gtcgagctggccaacatctatggcccgaccgaaaccacggtgatggccaccatcaaccgc
atgggcggcgacaaggcggccaacaatctcggccacccgctgcgcggctatgacacctat
ctgctcgacgaacggggccagctctcgccgctcggtggcgttggggaaatctgcatcggc
ggggcggctgtggcgcgcggttatctcggccgaccggagctgacggcgaagaaattcatc
cccaaccccttcggccctgggcgcctgtatcgcaccggggatctcgggcgctaccgcccc
gatggcgagctggagtttctcgggcgcagtgactttcaagtgaaagtgcgcggctttcgc
atcgagctgggcgacatcgagcatgccatcgccgagcagcccgagatctcgggtgtctat
gtcggcgccttcgaggtgcagggcagcaaggcgctgatcgcctggtatgtcagtaccgag
ctgaagcccgatgccttgcgcacccgactagaagccaagctgcagcgctacatggtgccg
agctatctgatcccgctcgaggccttcccgctcaacatcagcggcaagatcgaccgcacc
cgcctgccgatgccgggcgcagatgacgcgaccgtcgccgccagccaggacgtcgacgcg
ctcgagcacctggtccgcgagacatggtcaaaagcgcttggggtggctccggccaagttc
gcgccagacagtcatttcttccacctcggtggccactcgctgctggtggtgcaggtctgc
ctgcacctgtcggaagccctgggcagcaacattcgccccaagcagctatttgagcacccg
ctgcttggagagttttgcgacctgctgcgcggcgccccggcaggcgccaacgccaaccca
ctaccgccgctggtggcgaccggcaagaccagagccccggtgctgaaccgactcattggc
ctgattcaaagccgtgccctgcgactgccagaggacaacacttacaacatcgtggtgcgg
attgatttctccgcagagatcaatccactgcaactgcgcaccgccaccaccgagctgctg
gccgcgcatccggtattccgcgcctgcttcgccgagcaggatgggcaactctatattcag
attccagagcctgcggccaaggacgatcagcccctagtggctctgcacgacagcagcaac
gaaggcatccacgcgcgcaccgagacactgcgacaccaacccctcggcatcgacagcgcg
cccctatggcgggccgagttgcatgtcagcaccgccggcacatgtagccttgtgttctgc
atccatcatgcgattttcgacggctggtccttcaatctctttcttgatgaactgggcgag
cgctacctgcgccacccggtgccggagcgcctgaacattttcgattactgcgactggtcg
cggtgcttgccgaagagtccgcccttcgccgagtccatcgcttactggaagcacaagctc
ggaggggccgatgcgcataccgaactgcccatcgaccaaaatcccggcaatcccaatgaa
tcgcccgatacgaatcaagcactggcgctgcgcttcgcgccagagacagtcgccgccctg
aaggcctttgccgacgaggccgggatcaccatgtcgccgctattgtttgctctctacctg
gtatggatctggcgcctgaccggccagcgcgaactggtctgtgcctacccttacgccggg
cgcgacatcgccggcaccgagcacatctacggcatgtttgtcaccatgggatttctgcgc
cagacactcgacccgcgggcgtcattcggtgaactggcgacggctgtgcatcggcagatg
ctggatgacaaggaccatttgctcgccacgccttacgacgccgaaatcgccgggctcgaa
tccctaaacctgatcttcagtctgcaaagcggcattggcctggagggaagcttcggcgag
gtgggcttcaaggccgatgagctgccggcagccaccgccaaggccgatctgaccgggatt
ttttatcaaagtctcgacggcgccattgagggccggctggaatacgacagctcgcgcttt
cacccagagaccgtcagcggctttctcgacacctatcaaagtctggtggaagcagcggcg
cgcgcgccccaaagtcgggtcaatgagttggcgtatcagtccgacgccgatctcagccgc
ttcatggggtttgcctgtgggccacggctagagctgccgccctccacgatccctgcgcgc
tttgccagtgtcgcagcgcgcgcacccgaggcgccagccgtgctgttcgaagggcgctca
ctcagctaccaggcgctcgccgagttgagtgatcgcatcgcctctggcctgctgcggcgc
ctggcgcccggcagccgtgttggactcagcatgcacaagagcgacaccttggtcgccacc
ctgcttggcatcctcaaggccggttgcgcctatgtgccgctcgaccccagctacccgccg
gagcggctgcgcttcttcgccgagaatgccggcgtgacccatgtcgccgccgatgccccg
agccgcgaggcgctgactgagataggactggggggcctgcgctttttcgatccggatcag
gatctcgccccaagcgcgggcgagcagccaaaggtcggcccagaaaccctggcctacatc
attcacacctccggctccaccggtcagcccaagggggtgatgatcgagcagcacaacctg
gtgcattttgccgtcagcgccgccgctgcgatgcagctcgaggcgggcagcgttgtcgcc
ttaatcgcctcgatgaatttcgatgccagcgtgctcgagatcttcccggccctgctcaat
ggccacacgctagccgtggtgcctgaggatgcgcgcaaggagccggcgctgctgcatcgc
accatcggagagctcggcgtcacacataccatcatgtctcccgtggtactaaggaacctg
ccgcacgagccgctgccagcattgcgcatgctcggcttcggcggtgatgtgatcgaccag
cagaccgccgactggtggtcgcgccaaactcgattcctaagcatgtacgggccgaccgag
accacagtaatggcctcgctcggcgagatcgcgccaggcgccaatgcgcgcatcatcggc
cgtccgctgccgggttatcgactctatctgctcgaccgcgaccatcagccggtgccccag
ggcgcggttggcgaaatctgcattggcggcgaggggctcgcgcgcggttatctgaaccgc
gacgatctgaccgtcgagcgcttcgtgctcgaccccttcggtggctcgccctatgcgcgc
atgtatctgactggcgatcttggccgctttttgcccgatggcaccatcgagtttttcggt
cgcaatgacgcgcagatcaaggtgcgcggcttccgcatcgaactcggcgagatcgaaaac
agtctcgcgagcttccccggcatcaagcaggtggtctgcgcggccaagggcgagggcgag
aaccgttatcttgcggcctactatctggctgacagtgatctctgcgagtcggccttgcgc
aagcatgctggcgaattcttgcctgattacatgattccgtcgttctttgtgcgattgtct
gccctgcccgtctcgccaagcggcaagatcgatcgcaaggcactgccagcggtcgctggc
aaggaaagccaaaatcctccgcaggagggggcggagcggcagatcgccgacatctgggaa
gacctgctgcattaccacggcattgatcgcgatgacagtttcttcaacgtcggcggcaac
tcgctgctggcggtgcgcatgcaggcggcagttgagaaaaagctggggctcgagttcagc
atcagtgatttctaccgcgcgccaaccatcgccgcgctggcggctggtcagcagcaggac
ttcatcgctcaggctgttgccgatgccgaggctgaactcctcgtagccgaaccggcgcag
catccccaggacccaatggctgcgccgcagtccatcctgctgaccggcgcgcgcggcttc
ctcggtatcttcctgcttgcagagctgacccggcgctgcgagcatgtccactgcctgttg
cgctgcgataacaaggccgcaggtctggccgccttgcgcaagcaggccgccgaggctggc
gtcgatccggattttgctcgcgtcatcatcgtcccaggcgatctgggcgaacccggactc
ggtttgagcgacgaggcgcatgcgcgcctggcgagcgacatcgacgccatcctccactgc
ggcgccttcgtccatcatctctacagctatgcgaccatgaagccgatcaacgtcggcggc
accgaggcgctgctggcgctcgccctgagcggtcggcagaaacccttctgctatgtctcg
accatcaccgtcggtgcctcactgaccgatgttgatcggattgccgaggatgtcctgccc
aacgcgccggcggtggataacggctatatcctgaccaaatgggtcggcgagcagcgcatc
gcccgtgcggtgcgcaaattcggcctgcctgccgtcatcgctcggccaggcaatatcacc
ggcagcagtgcgagcggctacagcaactatcacaacaaccacttctggcgcttcaccaag
ggctgcctgcaactcggcgcctacccggatatccccatgcctatcgagatgatgccagtc
gatcacctagccgctgccatcgccgccttggccacccgtgcgccagagccgcccgagtcc
caaagcaggctgctggtggccaacctggccaatccgaccagcctatcgttgggcgatttc
ttcgctcagctgtctgccgctggttatccagcccaggcggagccagcgaccgcgtggcag
aagcgcctcagtcacctggccccggacaacgcgctgagccaaatcaaggacttctacacc
ggcgacctgtctggcgaagcgccacccacggagcaacaacagacgctggcggcactccag
gcggctggcgcgtcgcttgatgccgactatgacgcgctcatcccgctttatgccagctat
ctcgagcgatctggatggattgttcgcagtggcgcagactag
DBGET
integrated database retrieval system
