Thiorhodovibrio frisius: Thiofri_01609
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Entry
Thiofri_01609 CDS
T09561
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tfri
Thiorhodovibrio frisius
Pathway
tfri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thiofri_01609 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfri03019
]
Thiofri_01609 (rhlE)
Enzymes [BR:
tfri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Thiofri_01609 (rhlE)
Messenger RNA biogenesis [BR:
tfri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Thiofri_01609 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WPL21483
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All DBs
Position
1674275..1675591
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AA seq
438 aa
AA seq
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MSFSDLGLSAKLLRAVTARGYTEPTPIQNQAIPAILAGRDVMAGAQTGTGKTAAFTLPLL
QRLSQSGQQASARSPQPRALVLTPTRELAAQVGESVSAYGQYLPLRALQIFGGVGMGPQI
TALRRGVDILVATPGRLLDHVGQGNLDLGHVELLVLDEADRMLDMGFMPAIRRVLKLLPA
RRQNLLFSATYSRDIEQLATGLLNDPLRIEVARRNTAAETVRQLAHPVERGHKRALLSHL
IASGGWDQTLVFTRTKHGANRLAQQLERDGISAAAIHGNKSQSARTRALADFKRGAVRTL
VATDIAARGLDIERLPHVVNFELPNVAEDYVHRIGRTGRAGESGTAVSLVSPEEGSLLAG
IERLLGRRIESQAIPGFSDRKATPASADDGADTRSRTKGSRPPRSASPNGGSARAHRQTL
PGARGRKTSRASGPRAAR
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtccttttccgatctcggcctgtcggccaaattgctgcgcgccgtgacggcgcggggc
tacaccgagcccacccccattcagaaccaggctatccccgccattcttgcaggtcgtgat
gtgatggccggcgctcagacgggcacaggcaaaaccgccgctttcaccttgccgctgttg
caacgcctgagccagagcggccaacaagccagcgcgcgttcgccgcaaccccgtgctctg
gtgctgacgccgacccgcgagctggctgcgcaggtgggtgagagcgtcagtgcttatggc
cagtatctgccgctgcgcgccttgcagatttttggcggtgttggcatggggccgcaaatc
accgccttgcgccggggcgtcgatatcctggtcgccacaccagggcgcctgcttgaccac
gtcggtcagggtaatctggacttgggccatgtcgaactgctggtgcttgatgaggccgac
cgcatgctcgatatgggcttcatgccggccatccgccgggtgctgaagctgctgccggct
cggcgtcagaatttattgttctcggcaacctattcgcgcgacatcgagcagcttgctact
ggcctgctgaacgacccgctgcgcattgaggtcgctcgccgcaacaccgccgccgagacg
gtgcggcaacttgcgcacccggtcgagcgtggccataagcgcgcgttgctctcgcacctg
attgccagcggcggctgggaccagacactggtctttactcgcaccaagcatggcgccaat
cgactcgcgcagcagctcgaacgcgatggcatcagcgccgccgccattcatggtaataag
agtcagagcgcgcgcacccgcgccctggccgatttcaaacgcggggccgtgcgcaccctg
gtcgccaccgacattgccgcgcgcgggctcgacatcgaacgcctgccgcatgtggtgaac
ttcgagctgccgaatgtggctgaggattacgtgcaccgcattggccgcactggtcgtgcc
ggagagagcggcaccgccgtctctttggttagccccgaggaaggctcgctgctcgctggc
attgagcgcctgttgggccgtcgcatcgaaagccaggccatccccggcttttctgatcgc
aaagctactcccgccagcgcggatgatggcgcagacacccgctcgcgcaccaagggctcg
cgcccgccacgttcggcgtcgcccaatggcggctccgctcgggcacatcgccagacgctg
ccgggtgcacgcgggcggaaaacgtcccgggctagcggtccccgcgccgcgcgttaa
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