Thiorhodovibrio frisius: Thiofri_01715
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Entry
Thiofri_01715 CDS
T09561
Symbol
recQ_1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tfri
Thiorhodovibrio frisius
Pathway
tfri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thiofri_01715 (recQ_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfri03019
]
Thiofri_01715 (recQ_1)
03400 DNA repair and recombination proteins [BR:
tfri03400
]
Thiofri_01715 (recQ_1)
Enzymes [BR:
tfri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Thiofri_01715 (recQ_1)
Messenger RNA biogenesis [BR:
tfri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Thiofri_01715 (recQ_1)
DNA repair and recombination proteins [BR:
tfri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Thiofri_01715 (recQ_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
AAA_30
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
WPL21589
LinkDB
All DBs
Position
1792495..1794603
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AA seq
702 aa
AA seq
DB search
MERREAETLLRTAIGDSAGCFRDGQWEAIDALVNHRQQLMVVQRTGWGKSSVYFISTRIL
RDSGAGPTVIVSPLLALMRNQIEAAQRLGIRAETINSTNQQEWPKVQRKILSDQVDAILI
SPERLSNESFVEEVLLPIADRIGLLVVDEAHCISDWGHDFRPDYRRLVNILQQLPPNVPL
LGTTATANNRVIKDVQSQLGDIEIQRGTLVRESLVLQTLRMKDQASRLAWLAQRIPELPG
TGIVYVLTVRDAEQVAEWLQSQGIEARAYYGSVEHPDFADKHKYREHLEDLLLHNKIKAL
VATTALGMGYDKPDLGFVIHYQTPGSIIGYYQQVGRAGRGIDTAYGVLLSGKEDEDIHEF
FRRSAFPDERDVNAILDVLAASDGLSLPQIQSRLNLRQGQIEKVLKVLSVETPAPLIKEG
SRWLRTPVQYTMDHERIQRLTEQREGEWKQIIDYVDSQTCLMAFLRNALDNPEATECGRC
SACRGEPVVGIDVDRGLAVKAGQFLRHAEMTFSPKKQVDRGAFATYNFLYGPGGRVPQSL
CAENGRILSRWGDAGWGGLVTDDKHTGHFRDELVGAVADMIDQRWQPDPAPRWVTCVPSR
NHPNLVPDFARRLAARLNLPFVDAIDKVRDNEQQKMQQNRFHQCRNLDGVFQVAAQIPSG
PLLLVDDMIDSGWTVTVLAALLRRAGSGPVFPVALASTTSGD
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggaaagacgagaagctgaaaccttattgcgaacggccataggcgattcggcagggtgc
tttcgtgacggccagtgggaggccatcgacgcgctggtaaaccatcggcaacagctcatg
gtggtgcagcgcacgggctgggggaaaagttctgtctacttcatcagcactcggattctg
cgagattcaggggctggacccacggtgatcgtctctcccttgctggcgctgatgaggaac
cagatcgaggcggcacagcgacttggaattcgcgccgagacgatcaactcgacaaatcag
caggaatggccaaaggtgcagcggaaaatcctgtcggatcaagtcgatgccatcctgatt
tcaccggagcggctgtccaacgaatccttcgttgaggaggttctactcccgattgccgac
agaatcggcctgctggtcgtagacgaagcgcattgtatctcggactgggggcatgatttt
cggccagactaccgtcgtcttgtaaatattcttcagcaactaccgccgaacgtgccactg
cttggaaccacggccactgcgaataatcgcgtgatcaaggatgttcagtcgcagctcggc
gacatcgagattcaacgcggtaccttggttcgcgagagcttggtgctccaaaccctgcgc
atgaaagatcaagcatcgcgtctcgcttggttggctcagcgcattcctgagttaccgggc
accggaatcgtttacgtgctgacggttcgcgatgcggagcaggtcgcagaatggctccaa
tctcaggggatagaggcgcgggcatactacggtagcgtcgagcatccagactttgcggac
aagcacaaatatcgagaacatctcgaggatctgctacttcacaacaagatcaaagcactg
gttgcgacgacggcactggggatgggctacgacaaaccggatctcggtttcgttatccac
tatcagacccctgggtcgatcatcggctactaccaacaggtcggtcgtgccggacgaggg
atcgatacggcgtatggcgtgctgctgtccggcaaagaagacgaggatatccacgagttc
ttccggcgcagtgcatttccggatgagcgggatgtcaatgcgatactcgacgttttggca
gcaagtgacggtctttcattaccgcagattcagtcccggttgaatctcaggcaaggccag
attgagaaggtattgaaggtcttgagcgtcgagacgccagcaccgctgatcaaggaagga
agtcgctggctccgtacccctgtccaatacacaatggaccacgagcgtattcagcgcctt
accgaacagcgagaaggtgaatggaagcagattatagactacgtagacagccaaacgtgc
ctgatggcgttcctgagaaacgcactcgataaccccgaagcaactgagtgcggaaggtgt
tcggcatgtcggggcgagccggtcgtcgggatcgatgtggatcgagggctggccgtcaag
gctgggcaatttttacgtcatgcagaaatgacctttagcccgaaaaaacaggttgatcgc
ggtgcatttgccacctacaactttttgtatggcccaggtgggcgtgttcctcaaagtttg
tgcgcagagaatggtcgaatcctgtcgcgctggggtgatgcgggttggggtggcttggtc
accgacgacaagcacacggggcactttcgcgatgaattggtcggagccgtggccgacatg
atcgaccagcggtggcaacctgatccggctccgcgctgggtgacctgcgtgccttcccga
aaccatcccaacctggtgcccgatttcgcccgaaggcttgccgctcgccttaatctgcct
ttcgtcgatgccatcgacaaggttcgcgataacgagcagcaaaagatgcagcagaaccgc
ttccatcaatgccgtaaccttgacggagtcttccaagtggcggcgcagattccctcgggt
ccactgctgctggttgacgacatgattgattctgggtggaccgtcacagtgcttgctgct
ctgttgcggcgggccggtagcgggccggtatttcctgttgcgctagcctccacgacgagt
ggtgattga
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