Thiorhodovibrio frisius: Thiofri_01737
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Entry
Thiofri_01737 CDS
T09561
Symbol
rtcB_3
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tfri
Thiorhodovibrio frisius
Brite
KEGG Orthology (KO) [BR:
tfri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tfri03016
]
Thiofri_01737 (rtcB_3)
Enzymes [BR:
tfri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Thiofri_01737 (rtcB_3)
Transfer RNA biogenesis [BR:
tfri03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Thiofri_01737 (rtcB_3)
Prokaryotic type
tRNA splicing ligases
Thiofri_01737 (rtcB_3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WPL21611
LinkDB
All DBs
Position
1811107..1812297
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AA seq
396 aa
AA seq
DB search
MPIRQVFTEGEKPVKVWTDDIDARSQAQLINISRLPFIHKHVAAMPDVHLGIGATIGSVI
ATDKAIIPAAVGVDIGCGMAAARTSLTADQLDEKGLKKLFDQISRDVPVGRAQHKDDRAL
TDAAEPFAAPLKVMTDKHPQLLKAFGRFSNWVNQIGTLGGGNHFIEVCLDESDRVWVMLH
SGSRGNAIGHYFIELARRDMERWMIQLPDRDLAYLPEGTEHFDDYVEAVSWAQTYARENR
DQMMRLVLAALARHLPEFSVTEEVVNCHHNYVDRENHFGANVWVTRKGAIRAREGDLGII
PGSMGAKSYIVRGKGNPESFCSCAHGAGRRMSRTAAEKQFKPADLEAQTQGVVCRKDKGV
LDEIPGAYKDIDQVMANQSDLVEVVHTLKQVVCVKG
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgcccatccggcaggtattcaccgagggtgagaagcccgtcaaggtctggaccgatgac
atcgatgcacgctcgcaagcgcagctcatcaacatctccaggctgcccttcattcacaag
catgtcgctgccatgcccgatgtccatcttggcatcggcgcgactatcggcagcgtcatt
gccaccgacaaggccatcatcccggccgccgtcggggtcgacatcggctgtggtatggcg
gctgcgcgcacctcgctgacggcggatcagctcgatgagaagggcctgaagaagctgttc
gaccaaatcagccgcgacgtgccagtcgggcgcgcgcagcacaaggatgatcgggcgctg
accgatgcggctgagcccttcgctgcgccgctcaaggtcatgaccgacaagcacccgcaa
ttgctcaaggccttcgggcgcttctccaactgggtcaaccagatcggcaccctgggcggt
ggcaatcacttcatcgaagtctgtctggatgaatccgaccgggtgtgggtgatgctgcac
tccggaagccgtggcaacgccatcggccattacttcatcgagctggcccggcgcgacatg
gagcgctggatgatccaactcccggatcgggatctggcctacctgcctgagggtaccgag
cacttcgacgactatgtcgaggccgtctcctgggcgcagacctacgcgcgcgagaatcgc
gaccagatgatgcgcctggttttagctgcacttgcgcggcatctgccggagttcagcgtc
accgaggaagtggtcaactgccatcacaactatgtggatcgtgaaaaccacttcggcgcc
aatgtctgggtcacccgcaagggtgccatccgcgcgcgggaaggtgatcttggcatcatt
cccggtagcatgggcgcgaaaagctacatcgtgcgcggcaagggcaaccccgagagcttc
tgctcctgcgcccacggcgcagggcggcgcatgagccgcaccgccgccgagaagcagttc
aagccagccgacctggaagcccagacccaaggtgtggtgtgccgtaaggacaaaggggtg
cttgatgaaatccccggcgcctacaaggacatcgaccaggtcatggccaaccagagtgac
ctagtcgaagtggtgcataccctcaagcaggtggtgtgcgtgaagggataa
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