Thiorhodovibrio frisius: Thiofri_01760
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Entry
Thiofri_01760 CDS
T09561
Symbol
uvrD_1
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tfri
Thiorhodovibrio frisius
Pathway
tfri03420
Nucleotide excision repair
tfri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tfri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Thiofri_01760 (uvrD_1)
03430 Mismatch repair
Thiofri_01760 (uvrD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfri03400
]
Thiofri_01760 (uvrD_1)
Enzymes [BR:
tfri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Thiofri_01760 (uvrD_1)
DNA repair and recombination proteins [BR:
tfri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Thiofri_01760 (uvrD_1)
MMR (mismatch excision repair)
Other MMR factors
Thiofri_01760 (uvrD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Viral_helicase1
UvrD_C_2
AAA_30
AAA_22
AAA_12
AAA_14
NACHT
Motif
Other DBs
NCBI-ProteinID:
WPL21634
LinkDB
All DBs
Position
complement(1832979..1834772)
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AA seq
597 aa
AA seq
DB search
MTKKVKIVQAVAGSGKTTLLKKEIETARNYDGLSPDQILFVTFSRKLAEELNREIGNQAT
VKNLHKLGFNLIRKNTSYFGFAKIPKLYHSSSERKLFRSVTRGFLSKTQAKDFFKARQKG
QSRKEICQSLNLDEAIIKKLLKEFSKQKKKRNVCSFTDMTLLGSKACWAWSKNKNVSFQP
PRLLCVDEFQDLNDAEKLFIRRLITVSEKGIIVGDDRQAIYSFKGASFNAVSKLKDEIPN
CQYETLDRSYRLTMETAALVNACENTEGYPRIKSLRPGCKPLFLECSSRREGLDAAAIEI
KRLLDDGVSPKAIACITKFKKDFRQFQSFLVKNGVPVKVSKLAADELEVIEHFLYYLEII
LDENESNRMLVSYLQDYLDLSEEQATSICSNIDARITGKELGIDDSTRRKTRDRLNGIIT
LDEKCSFERVLRIFTKKFQGKLDGSFHLAIKNLLGRYGLLENYEIASDDPKVKIETLKKS
IEQFLESENDTIYVNTQHSAKGRTFDHVFLIDIFEGNISYKFKKWSKREESNLFHVALTR
ARERLYLVFFKEDLGFENKQKEKSEKKRRQVGKHERQLISFLPDRSLISKYCEVKTL
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
ttgactaaaaaagttaaaatagtccaggcagtagcaggaagcggcaaaacaactctgcta
aaaaaagaaatagagactgctagaaattatgatggacttagtccggatcaaattcttttt
gttaccttctctcggaaattagctgaagaacttaacagggagataggaaaccaagcaacc
gtaaaaaatcttcataaactcggttttaatctcataagaaaaaacacttcatattttggc
tttgccaaaataccaaaactttatcattcaagttctgaaagaaaactctttcggtctgtg
actcgtggttttctctcaaagacccaggcaaaggattttttcaaagcaagacaaaaagga
cagtctagaaaagaaatatgtcagagtttaaatctcgatgaagcgatcattaaaaagtta
ctgaaagaattttctaaacaaaagaagaaacgaaatgtttgttcctttacagacatgact
cttttaggaagcaaggcatgttgggcttggtctaaaaacaaaaatgtatcttttcagcct
ccaagactcctttgtgttgatgaattccaagatctaaacgacgcagagaaactatttatt
cgacgattaatcactgtctctgagaaaggaatcattgtcggcgatgatcgacaggctatc
tactctttcaagggagcgtcttttaatgctgtctcaaaactaaaagacgaaattcctaac
tgccagtacgagactttggatcgctcttaccggttaaccatggaaacggccgctctagtc
aacgcctgcgagaacaccgagggttatccaagaattaaaagtttaagaccagggtgcaaa
cccctttttcttgaatgttccagtcgaagagaaggtcttgacgctgcggctatagagatt
aagcgtttattagatgatggtgtttctcctaaagcgatagcttgcattacaaagtttaag
aaagacttccgtcagttccagtcttttcttgttaaaaacggagtaccagtcaaggtttca
aaactggccgctgatgagttagaagtgattgagcatttcctttattacttagaaattatt
ttagatgaaaatgaaagtaatagaatgcttgtcagttaccttcaggattacttggacctg
agtgaagaacaagcaacgtcaatatgttcaaatattgatgctcgaattactggaaaagag
cttggaattgatgactcgacaagaagaaaaacaagagatagattaaacggaataataact
ttagatgaaaaatgctcttttgaaagggtacttagaatctttactaaaaagttccaggga
aaacttgatgggagttttcatttagcaattaagaatctgttagggcgttatggcctgcta
gaaaactatgaaattgcttcagacgatcctaaagtaaagattgaaactctgaaaaagagc
attgaacaatttttagagtcagaaaacgacacgatatatgttaatacccagcatagcgct
aaaggccgaacatttgatcatgtttttctgattgatatttttgagggaaatatcagttat
aaatttaaaaaatggagtaagagagaggagtcaaacctttttcatgtcgcgcttacgcgc
gcgagagaaagactgtaccttgtcttctttaaagaagatctagggtttgagaacaaacag
aaggaaaaatctgagaaaaaaagacgacaggttggaaagcatgagagacaactgattagt
tttttacctgatagaagtttaatttctaaatattgtgaggtgaaaacactttag
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