Thiorhodovibrio frisius: Thiofri_01822
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Entry
Thiofri_01822 CDS
T09561
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tfri
Thiorhodovibrio frisius
Pathway
tfri03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tfri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Thiofri_01822 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfri03021
]
Thiofri_01822 (rpoB)
03400 DNA repair and recombination proteins [BR:
tfri03400
]
Thiofri_01822 (rpoB)
Enzymes [BR:
tfri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Thiofri_01822 (rpoB)
Transcription machinery [BR:
tfri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Thiofri_01822 (rpoB)
DNA repair and recombination proteins [BR:
tfri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Thiofri_01822 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
WPL21689
LinkDB
All DBs
Position
1892950..1897101
Genome browser
AA seq
1383 aa
AA seq
DB search
MAYMFTEKKRIRKDFGKRPIILDVPFLLATQIESYRDFLQIDKTAAERADVGLHAAFGSV
LPIESYSGNAVLEYVRYRLGDPVFDVRECHLRGATYAAPLRVLLRLVIYDKDAPAGTKVV
KDIKEQEVYMGDLPLMTETGTFIINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLFSA
RVIPYRGSWLDFEFDPKDNVYVRIDRRRKLPATVLLRALGYSTDDILELFFETDRFHLGE
EIEFDLVPERLRGETVNFEIKIDDQVLVEPGRRVTARHIRELQKAGIDRLTVPEDFLIGR
TIARTQIDAETGEIIAEGNSEITPELLEVLREKGIAELETLFVNDLDHGPYMSETLRIDT
TRNELEAQVEIYRMMRPGEPPTKDAAQNLFHNLFFTPDRYDISAVGRMKFNRRLGREATE
GAGVLYDGRYFSQRGDTFAQQLHAENGETSDIVDALRVLVELRNGRGTVDDIDHLGNRRI
RCVGEMAENQFRVGLVRVERAVKERLSLAESEGLMPQELINAKPVSAAIKEFFGSSQLSQ
FMDQNNPLSEVTHKRRVSALGPGGLARERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN
SLAVYARTNSYGFLETPYRKVENGRVTDQIDHLSAIEEGHYVIAQANATLDDGGQLTDAL
VSCRHMNEFTMKAPEEVQYMDVSPRQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTL
RAEKPLVGTGMERVVAKDSGVVVWARRGGVIESVDAARIVVRVNDDETEAGEPGVDIYNL
TKYTRSNQNTCINQRPLVHPGDQVARGDVLADGPSTDMGELALGQNLRVAFMPWNGYNFE
DSILISERVVQEERFTSIHIEELTCLARDTKLGPEEISGDIPNVGEAALARLDESGIVYI
GAEVQDGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSQRLPSGMAGTVVDVQV
FTRDGVEKDKRALEIEEMELERVRKDLDDQLRIMEKDTFNRIEKMLVGKVADGGPGGLKA
GAKITKSYLAEITDGHKRDKWLEIRLRSEDAASQLEAVAKQIKEQREAFRERFEIKKQKI
TQGDDLAPGVLKMVKVYVAVKRRIQPGDKMAGRHGNKGVISRVVPVEDMPFSADGEPVDI
VLNPLGVPSRMNVGQVLETHLGWAAKGLGHRIQAMLQAQAGIAELRGFLDQVYNSSGRRE
SLDELSDEEIFELARNLQGGVPLATPVFDGADEEEIRAMLRLANLSETGQTQLWDGRTGE
VFERPVTVGYMYMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEAGMPESFNVLVKEIRSLAINVEL
EQD
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atggcctacatgttcactgaaaagaagcgcattcgcaaagatttcggcaagaggccgatt
attctggatgtgccctttctgcttgcgactcagatcgagtcctatcgagacttcttgcag
atcgataagactgcggctgagcgcgcggatgttggcctgcatgccgccttcgggtcggta
ttgccgatcgagagctactcaggtaacgcggtgctggaatatgtgcgttaccgcttgggc
gatccggtcttcgacgtgcgcgagtgccatctgcgcggcgcgacctatgccgctccgctg
cgcgtgctgctgcggctggtgatttacgacaaagacgccccggccgggaccaaagttgtc
aaggacatcaaggagcaggaagtctacatgggcgacctgccgctgatgaccgaaaccggt
accttcatcattaacggtaccgagcgggtcatcgtgtcccagttgcatcgttcgcccggg
gtcttttttgaccacgataagggcaagacgcattcgtccggcaagctgctgttttcggcg
cgggtgattccctatcgtggctcctggttggattttgaattcgatcccaaggacaacgtt
tatgtgcgcatcgaccggcggcgcaagttgccagcgaccgtgctgctgcgggcgcttggt
tacagcacagacgacattctggagttgttttttgaaaccgaccgcttccatcttggagag
gagatcgagttcgatctcgttccggagcgcctgcgtggcgaaacggtcaatttcgagatc
aagatcgacgatcaggtcttggttgagcctgggcggcgggtaactgcgcgccatattcgg
gagctgcaaaaagccggcattgatcgcctgacagtgcctgaggattttctgattgggcgc
accatcgcgcgcactcagatcgatgccgagactggcgaaatcatcgccgagggcaacagc
gagatcacgcctgagttactcgaggttctgcgcgagaagggcattgccgaactcgagacg
ctctttgtgaatgatctcgaccatggcccctatatgtccgagacgctgcgcattgatacc
acgcgcaatgagctcgaggcccaggtcgaaatctatcgcatgatgcgccccggggagccg
cccaccaaggacgctgcgcaaaacctgttccataatctgtttttcacgccagatcgctac
gacatctctgccgtggggcgcatgaagttcaaccggcgcctcgggcgcgaggcgaccgaa
ggcgccggcgtgctctacgacgggcgttacttcagtcagcgcggcgataccttcgcgcag
cagctgcatgctgaaaatggcgagacgtccgacatcgtcgatgcgctgcgggtgctggtg
gaattgcgcaacggccgcggtacggtcgacgatatcgaccacttgggcaatcgccgcatc
cgctgcgttggcgagatggccgagaaccagttccgtgtcgggctggtgcgagtcgaacgc
gcggtcaaagaacggctgtcgctggcggagtccgaaggcctgatgccgcaggagctgatc
aacgccaagccggtctcagcggcgatcaaggagttttttggttccagccagttgtcgcag
tttatggaccagaacaatcccctttccgaggtcacccacaaacgtcgtgtctcggctttg
ggcccaggtggtctggcgcgcgagcgagcgggctttgaggtgcgcgacgtgcatccgact
cattacggtcgtgtgtgcccgattgaaacgccggaaggcccgaacatcggcctgatcaac
tcgctcgcggtctatgcgcgcaccaactcctacggctttctggaaacgccctatcgcaag
gtggagaacggccgggtgaccgatcagatcgatcatctctcggcgattgaggaaggtcac
tacgtcatcgcccaggccaacgcgaccctggacgatggcggccagctgaccgatgcgctg
gtgtcctgccgccacatgaacgagttcaccatgaaggcgcccgaagaagtccagtacatg
gacgtctccccacgccagattgtatcggttgcagcctcgctgattcccttcctggagcac
gatgatgccaaccgcgcgctcatgggctcgaacatgcagcgccaagcggtgcccaccctg
cgtgcagaaaagccgctggtcggcaccggcatggagcgtgtggtcgccaaggactcgggc
gtggtggtctgggcgcgccgtggtggtgtgatcgagtcggtcgatgccgcgcgcatcgtg
gtgcgtgtcaatgacgacgagactgaagccggtgagccgggtgtggacatctacaatctg
accaagtacacccgctctaaccagaatacctgcatcaaccagcgtcccctggtgcatccg
ggcgatcaagttgcgcgtggcgacgtgcttgcggacgggccttccaccgacatgggcgag
ctggcgttggggcagaatctgcgtgtcgccttcatgccctggaacggctacaacttcgag
gactccatcctgatctctgagcgggtggtgcaggaagagcgctttaccagcatccatatc
gaagagctgacttgtctggcgcgcgacaccaagctcggtcctgaggaaattagcggcgac
attcccaatgtgggcgaggccgcactggcgcgtctggatgagtcaggaattgtttacatt
ggcgccgaggtgcaggatggcgacattctggtcggaaaggtcacgccaaagggcgaaacc
cagttgacgccagaggaaaaattgctgcgcgccattttcggtgagaaggcgtcggacgtg
aaggacacctcgcagcgcttgccctcgggcatggctggcactgtggtcgatgtgcaggtg
ttcacccgtgatggcgtcgagaaggacaagcgcgcgttagagatcgaggaaatggaactc
gagcgggtgcgcaaggaccttgatgaccaactgcgcatcatggagaaggacacctttaac
cgcatcgagaagatgcttgtcggtaaggtggccgacggtggccccggcggtctcaaggcc
ggtgccaagatcaccaagagctatctggcggaaatcaccgatggccacaagcgcgacaaa
tggctggaaattcgcctgcgcagtgaagatgctgctagtcagcttgaggccgtggccaag
cagatcaaggagcagcgcgaggccttccgcgagcgcttcgagatcaagaaacagaaaatc
acccaaggcgatgatctggcccctggcgtgctgaaaatggtaaaggtctatgtggcggtg
aagcggcgcatccagcccggtgacaaaatggctgggcgccatggcaacaagggcgtcatc
tcgcgcgtggtgccagtggaggacatgcccttcagcgccgacggcgagccggtggatatc
gtgctcaatccgcttggcgtgccttcgcgcatgaatgttggtcaggtgctcgagacccat
ctgggctgggccgccaagggccttggtcaccgtattcaggccatgttgcaggcgcaagcc
gggatcgccgaattgcgcggctttctcgatcaggtctacaacagcagcggtcggcgcgag
tcgctcgatgaactctccgatgaggaaatcttcgagttggcgcgcaacctgcaaggtggt
gtgccgctggcgactcctgtgttcgacggcgccgacgaagaggaaattcgggccatgttg
cgcctggcgaatctgtctgaaactggccagacgcagctttgggacggacgcaccggcgaa
gtcttcgagcgcccggttaccgtcggctacatgtatatgctcaagctgaaccatttggtt
gacgacaagatgcacgcgcgctcgaccggtccttacagcctggtcacccaacagccgctt
ggcggcaaggcgcagtttggcggacagcgcttcggcgagatggaggtgtgggcactcgag
gcctatggcgcggcctacaccctgcaggaaatgctgacggtgaaatccgacgatgtgaat
ggtcgtaccaagatgtacaagaacatcgttgatggcgaccatcgcatggaagccggcatg
ccggaatccttcaacgttctggtgaaggaaatccgctcgcttgccattaacgtcgaactc
gagcaggactga
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