Thiorhodovibrio frisius: Thiofri_01852
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Entry
Thiofri_01852 CDS
T09561
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
tfri
Thiorhodovibrio frisius
Pathway
tfri03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tfri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Thiofri_01852 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfri03021
]
Thiofri_01852 (rpoA)
03400 DNA repair and recombination proteins [BR:
tfri03400
]
Thiofri_01852 (rpoA)
Enzymes [BR:
tfri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Thiofri_01852 (rpoA)
Transcription machinery [BR:
tfri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Thiofri_01852 (rpoA)
DNA repair and recombination proteins [BR:
tfri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Thiofri_01852 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
Motif
Other DBs
NCBI-ProteinID:
WPL21719
LinkDB
All DBs
Position
1920426..1921439
Genome browser
AA seq
337 aa
AA seq
DB search
MSDVASGFLKPRIVTVDAVDGSRRHAKVSLEPLERGFGHTLGNALRRILLSSMDGYAVTE
VEIQGILHEYSAIEGVQEDVLEILLNLKQLALSLQGRDEATFTLSKTGPGTVTAADIALD
HAAELANPDLEIAHLTDATELSMTLTVRRGRGYEPASVRDIEGGEDRPIGKLPLDASFSP
VVRVAIEVQSARVEQRTDLDRLVIDIETNGTVEPKEAIERAALILRDQLSFFVEIEDSGI
GEDSDEEAAEEVGIDPMLVRPVDELELTVRSANCLKAENIYLIGDLIQRTEVELLKTPNL
GKKSLTEIKDVLATRGLSLGMRLERWPPDNVEELMVK
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatgttgccagtggattcctgaaaccgcgcattgttaccgtcgacgcggttgat
ggcagccggcgtcacgcaaaagtttccctcgagccgcttgagcgtgggttcggccatacg
cttggtaatgcgctgcggcgcatcctgctatcgtccatggacggctatgcggtgaccgag
gtcgagatacagggcattttgcacgagtattcagctatcgaaggcgtgcaggaagatgtt
cttgagattttgcttaacctcaaacagctggccttgtcgctgcaaggtcgtgatgaggcg
actttcactctgagcaaaaccgggcctggcaccgtgacagccgcggatatcgcactcgat
catgcggcggaattggccaatccggatctcgaaattgcccacctgaccgatgcaaccgaa
ctcagcatgacgctgaccgtgcggcgcggacgtgggtacgagccggcaagcgtgcgcgac
atcgaaggcggtgaagatcgtccgattggcaagttgccgctcgacgcttcgtttagccct
gttgtgcgtgtcgccattgaggtccagtcggctcgtgtcgaacaacgaaccgatctcgac
cgtctggtgatcgatatcgagaccaacggtactgtcgagccgaaggaggccattgaacgt
gcagctctgattctgcgcgatcagttgtccttttttgtggagattgaagattccggcatc
ggcgaggacagtgatgaggaagcagccgaggaagtcggcatcgatccgatgctggtgcgc
ccggtcgatgaacttgaattgacggtccgctcggcaaattgcctgaaggccgagaatatc
tatttgatcggcgacctgatccagcgtaccgaggttgagttgctgaaaacgcccaatctc
ggcaagaagtccctgaccgaaatcaaggacgtgctggcgactcgtggactgtcgctcggc
atgcgccttgagcgctggccgccggataatgtcgaagaattaatggttaagtaa
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