Thiorhodovibrio frisius: Thiofri_02036
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Entry
Thiofri_02036 CDS
T09561
Symbol
hrpB_1
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
tfri
Thiorhodovibrio frisius
Brite
KEGG Orthology (KO) [BR:
tfri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfri03019
]
Thiofri_02036 (hrpB_1)
Enzymes [BR:
tfri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Thiofri_02036 (hrpB_1)
Messenger RNA biogenesis [BR:
tfri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Thiofri_02036 (hrpB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
NACHT
T2SSE
ABC_tran
AAA_30
AAA_23
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
WPL21899
LinkDB
All DBs
Position
2121151..2125176
Genome browser
AA seq
1341 aa
AA seq
DB search
MSNALVNDAMDGSPTSTALPTQADLASCLLRDRHRLRRRLKSLLGRDSRPPEESALADLK
QCIARSQALVEQRRQLCPAVIHYPPELPVSERREEVAALIEQHQVIVLCGETGSGKSTQL
PKICLELGRGLFGRIGHTQPRRIAARSLASRVGAELDTELGGLVGYKVRFHDRVRPESRI
KLLTDGMLLAEIQQDRWLNEYDTLIIDEAHERSLNIDFLLGVLKQLLPKRPELKVIVTSA
TIDPQRFARHFADRHGQPAPIIEISGRTYPVETRYRPPAEEHAGERDEAMQTAISEAVAE
LAREGRGDVLVFLSGEREIRETAETLRKHHPPATEILPLYARQGPAEQARVFQPHGARRV
VLATNVAETSLTVPGIHYVIDPGFARISRYSYRTKVQRLPVERISQASANQRQGRCGRIA
NGICIRLYDEDAFQARAEFTEPEIQRTNLAAVILQMKLLGFGAIEGFPFIDAPDSRLIKD
GYRTLEELAALDAEGQLTPLGKQLARLPVDPRIGRLLLAGAEHHCLRELLIIAAALSVQD
PRERPLEKQQAADEVHATFRHEDSDFLAFVNLWNFLESERRKLSRRKFQNLCRLHFLSWT
RVQEWRDIHAQLREQLTEMGLVPKLEPVNRPADGSYEEIHRALLTGLLSNIGVKDEQREY
LGARNSRFYIHPGSGLASRLQRGSQPQAENQKAPKWILVAERVETTRHYGRTVAKIQPAW
IEAAGAHLIQRSYFEPHWQARAGQVAAFEKVTLYGLTLVPKRRINYGPNNPTEAREIFLR
FALTEGDFDTRAPFWRHNAELIDYVRHLEAKSRRHDILVDDEAIYAFYDQRVPSGIYSKP
QFEQWLRRALKKQPKLLHMSMQDVMHPDYNREAVGIIAEAFPDALRVGATELPLEYHFDP
GNQADGVTLVLPLPLINQLAPEQLEWLVPGLLEERITALLRGLPKPIRKALVPIPDTAAK
IAAGLSPSERPLIQALNEEIKSLTSQIIPEDAWDESVIPEHLRMKVRLIDQDGRAVASGE
DLIALKRQYGQAGGARFAEIPSAGLEREGLTRWDFGDLPAQIDLTRGGIRLRGYPALVDE
GKTVAVRVLDSEASAAQAMRAGLRRLIMLQLATDMRALRRQLPGLDRMRLQYAKAPVDAT
SRRAQPADLADELIALILDLAFLEDQPTPYSQSAFEQCLTAGKPRLFPTANEVCALAAEI
LGNYQSLRKQLGGITQINWLEAVSDMREQLDALVFKGFLQQMPFGQLKQYPRYLKAIGQR
AEKLFHAGGRDRALMVEIRPLLEQWGERQTAADKAGRADPRLAEIRWMLEELRVSFFAQQ
LGTAYPVSVKRVKARWRELGL
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgccctggtcaatgacgcaatggacggatctccgacctcaaccgcactgcca
acgcaagccgatctcgcctcctgcctgttacgcgaccgtcaccgtctgcgccgacgcttg
aagagtctccttgggcgtgattcccgcccgccagaggagtcggcccttgccgatctcaag
caatgcattgcgcgctcccaggcattggtcgagcagcgtcgccagctttgcccggctgtc
attcattatccgcccgagttgccggtaagcgagcgccgcgaggaggttgcggcgctgatt
gaacagcatcaggtcattgtgctgtgcggcgagactggctcgggtaagtcgacccagttg
ccgaagatctgcctggagcttgggcgcgggctgtttggacgcattggccatacccagccg
cgacgcattgctgctcgctcgctggccagtcgtgtcggtgccgaattggacacggaattg
ggcgggctggtcggctacaaggtgcgctttcatgatcgggtgcggcctgagagccgtatc
aagctgctgaccgacggcatgctgctggccgagattcagcaggatcgctggctcaatgaa
tatgacaccctgatcatcgacgaggcccatgagcgcagcctgaacatcgattttttgctc
ggagtgctcaagcagcttctgcccaagcgccctgagttgaaagtcattgtcacttcggcg
accatcgacccacagcggttcgcacgccattttgctgatcgccatggccagccggcgccg
attatcgaaatctccgggcgcacctatccagtcgaaacccgctatcgcccgcccgcagaa
gagcatgccggcgagcgcgacgaggccatgcagaccgccatctctgaggcggtggctgaa
ctggcgcgcgaagggcgcggcgatgtgctggtgtttctgtccggcgagcgcgagattcgc
gagaccgccgagacgctgcgcaagcatcatccgccggcgaccgagatcctgccgctttat
gcccgtcaggggccggccgagcaggcgcgcgtctttcagccccatggtgctcgccgcgtg
gtactggcgaccaatgtcgctgagacctcgctgacggtgcctggcattcactatgtgatc
gaccctggctttgcgcgtatcagccgctacagctatcgcaccaaggtgcagcgcctgccg
gtagagcggatttcgcaggcctcggccaatcagcgccagggtcgctgcgggcgtattgcc
aacggcatttgcatccggctctacgacgaggacgccttccaggcgcgcgccgagttcacc
gagcccgagatccagcgtaccaatctggccgccgtcatcctgcagatgaagctgcttggc
ttcggcgccatcgaaggctttccgttcattgatgcgcctgacagccgtctgattaaggac
ggttatcgcactctggaggaactggccgcgcttgatgccgagggccagttgacacctctt
ggcaaacagctcgcacggttgccggtcgacccgcgaatcggtcgcctgctgctcgcgggt
gccgagcaccattgcctgcgcgagttgctgatcattgcggctgctttgagtgtgcaggac
ccgcgcgagcgcccgctggaaaagcagcaagcagcggatgaagtgcatgccactttccgc
catgaagactcagattttctcgcctttgtgaatctgtggaattttctcgaatctgagcgg
cgcaagctctccaggcgcaaattccagaacctgtgccggctgcacttcctgtcctggact
cgggtgcaggaatggcgcgacattcatgcccagttgcgcgagcagttgactgagatgggc
ctggttcccaagcttgaacctgtgaaccggccagcggatggcagctatgaagaaatccat
cgcgcgcttctgaccggtctgctgagcaacattggcgtcaaagacgaacagcgtgagtat
ttaggcgcgcgcaatagccgcttctatattcatcccggctccggcctggcttcaagactt
cagcgtgggagccagccccaggctgagaaccaaaaggcgccgaaatggattctggtcgcc
gagcgggtggagacgacccggcactatggccgcaccgttgccaaaatccagccagcctgg
atcgaagccgccggtgcccatctcatccagcgcagctattttgagccgcactggcaggcg
cgcgccggacaggtggcggcctttgagaaagtaaccctctatgggctcaccctggtaccc
aaacggcggatcaattacgggcccaacaacccgaccgaggcacgggagatatttctgcgc
tttgcgttgaccgaaggcgactttgacacccgcgctcctttctggcgccacaatgccgag
ttgatcgactacgtgcgccatctggaggccaaatcacgtcgccacgacattctggtcgat
gatgaggccatctatgccttctacgaccagcgcgtgccgagcggcatttattccaagccg
caattcgagcaatggctgcgccgagcgctgaagaagcagccgaaactgctgcatatgagc
atgcaggatgtgatgcaccctgattacaatcgggaggccgtcggcatcatcgccgaggct
tttccggatgccttgcgggtcggcgccaccgaactgccactggaatatcatttcgatccc
ggcaatcaggccgatggcgtcaccctggtgttgccgctgccgctgatcaaccagctcgcg
cccgagcagctcgaatggctggtgccggggctgttggaagaacgcatcaccgcgctgctg
cgtggcctgcccaaacctatccgcaaggcgctggtgcccatccctgatacagcggcgaag
attgccgcgggcttgtcgcccagcgagcgaccgctgatccaggcgctgaacgaagagatc
aaatccttgaccagccagatcattccggaggatgcctgggatgaatccgtcatcccggag
catctgcgtatgaaggtgcggctcatcgatcaggacggtcgtgccgtggcgagcggggag
gatctgatcgcgcttaaacgccaatatggccaggccggtggcgcgcgctttgctgaaatc
ccgagcgccgggctggagcgcgaggggctgacccgctgggacttcggcgacctgcccgcg
cagattgatctcactcgcggcggcatccgcttgcgcggctatccggcgttggtcgacgag
ggcaagacggtggccgtgcgggtgctggattccgaagccagtgccgcgcaagccatgcgc
gccgggctgcggcggctgatcatgctacagctggcgactgacatgcgcgcactgcgccgg
cagctgccggggttggatcggatgcgattgcagtatgccaaggcgccggtcgatgcgaca
tcccgtcgcgctcagcccgctgatctggccgatgaactcatcgccctgatcctggatctc
gcctttctcgaggatcagccgaccccatacagccagagcgcatttgagcagtgcctgacc
gccggcaagccgcgtctgtttccaaccgcgaacgaggtctgtgccctggccgctgagata
ctcggcaattatcaaagcctgcgcaagcaactgggcggcattacccagatcaactggctc
gaggcggtgagcgacatgcgcgaacagctcgatgccctggtgtttaaaggtttcctgcag
cagatgccattcggtcagctcaagcagtatccgcgctatctgaaagccattgggcagcga
gccgagaagcttttccacgccggcggacgtgatcgtgcgcttatggtggaaatcaggccg
ctgctggagcaatggggggagcgccagacggccgctgacaaggcgggacgcgcggacccg
agactggctgaaatccgctggatgctggaggagctgcgggtgtcattttttgcccagcaa
ctggggacggcctatcctgtttcagtcaagagagtgaaggcgcgttggcgggagttgggg
ctttga
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