Thiorhodovibrio frisius: Thiofri_02214
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Entry
Thiofri_02214 CDS
T09561
Symbol
uvrD_2
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tfri
Thiorhodovibrio frisius
Pathway
tfri03420
Nucleotide excision repair
tfri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tfri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Thiofri_02214 (uvrD_2)
03430 Mismatch repair
Thiofri_02214 (uvrD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfri03400
]
Thiofri_02214 (uvrD_2)
Enzymes [BR:
tfri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Thiofri_02214 (uvrD_2)
DNA repair and recombination proteins [BR:
tfri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Thiofri_02214 (uvrD_2)
MMR (mismatch excision repair)
Other MMR factors
Thiofri_02214 (uvrD_2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
WPL22063
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All DBs
Position
2303441..2305600
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AA seq
719 aa
AA seq
DB search
MDVSRILDPLNPAQREAVSASGGNVLVLAGAGSGKTRVLVHRIAWLLRVEGLQPWAVLAV
TFTNKAAREMRSRIEEMLEQPVGGMWVGTFHGLAHRFLRAHWQDANLPQQFQILDSDDQF
RLVKRIIKTLELDEARWPPRQIQSYINKHKDEGRRAGHLDDGGDFYEQQLIRVYREYEDA
CARGGLLDFADLLLRTHELLRERPDILHHYRTRFRALLVDEFQDTNAIQYAWLRLLTGDQ
DNLFLVGDDDQSIYGWRGARVENIQSFQHDYPNTQVVRLEQNYRSSGNILAAANALIANN
PTRLGKELWTEDSAGEPVRLYSAFNEIDEARFVAERVRRGCTEEGMRRSECAILYRTTAQ
SRLFEEALMQIGLPFRVYGGQKFFERVEIKDALAYLRLLANPDDDAACERVLNVPTRGIG
TRTVEVLRGHAREARTSLWQAAHNALGGSLLSARATGALRQFVELIELMQQGLKDQSLAD
LTLQTIDDSGLPAHYEKAKDGRGIDRLENLEQLVEAARRFEAELEDEEADPLGSFLAHAA
LEAGEGQADGHEDAVQLMTLHSAKGLEFPLVFVTGVEEGLFPHSMSADDPDRLEEERRLC
YVGMTRAMQQLYLTHAESRRLHGREEYPMPSRFLREVPVALIEEVRAHGGQRRSGPVFSS
APASGGFQLGEQVMHPKFGSGVVLNSEGTGASARIQVNFEAVGAKWLVLAYARLERVSA
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggatgtttcacgaattctcgatcccctaaatcccgcccagcgtgaggcggtttccgcg
agcggcggcaatgtgttggttttggccggtgctggctcgggcaagacgcgggtgctggtg
catcgcatcgcctggcttttgcgggtggaaggcttgcagccctgggcagtgctggctgtc
accttcaccaacaaggcggcgcgggagatgcgctcgcgcattgaggagatgctcgagcaa
cccgttggcggcatgtgggtcggcacctttcatggcctggcgcaccgttttctgcgcgcg
cactggcaagatgccaacctgccgcagcagtttcaaattctggactcagacgatcagttc
cggctggtcaagcgcatcatcaaaactctggaactggacgaggcgcgttggccgcccaga
cagattcaaagctacatcaacaagcacaaggacgaggggcgtcgcgctggtcatctcgat
gatggcggggatttttacgagcagcagctcattcgcgtgtatcgcgagtatgaagatgcc
tgcgcgcgcgggggtttgctcgactttgccgacctgctgctgcgcacccatgagctgctg
cgcgagcgcccggacattctgcaccactatcgcacccgctttcgcgccttgttggtcgat
gagttccaggacaccaacgccattcagtacgcctggctgcggctgctaacaggcgatcag
gacaatctctttctggttggcgacgatgatcagtccatctatggctggcgcggcgcgcgg
gtggagaatattcagagctttcagcacgattatcccaacacccaggtggtgcgcctggag
cagaactatcgctccagcggcaatatcctggccgctgccaacgcgctcatcgccaataat
cccacccgcttgggcaaggaactctggaccgaggacagcgccggcgagccggtacgcctg
tattcggcctttaacgaaattgacgaggcgcgttttgtcgccgagcgggtgcgccgaggc
tgtacggaggagggcatgcggcgttcggaatgcgccattctctatcgcaccacggcgcag
tcgcgcttgtttgaagaagccctgatgcagatcgggctgccgtttcgcgtctatggtggg
cagaagttctttgagcgtgtcgagatcaaagacgcgctcgcctatttgcgcctgcttgct
aaccccgatgacgatgccgcctgcgagcgggtgctcaacgtaccgacgcgcggcatcggc
acccgcacggtcgaggtgctgcgtggccatgccagggaggcacgtacttcgctgtggcag
gcggcgcacaatgccctcggcggcagcctgctgtcggcgagggcaaccggcgcgctgcgt
cagtttgttgagctaatcgagctcatgcagcagggtctcaaggatcagtcgctcgctgat
ctcaccctgcagaccatcgacgacagcggtctgccggcccattatgagaaggccaaggac
ggtcgcggcatcgaccggctcgagaacctcgagcagctggtcgaggctgcgcgccgcttc
gaggccgaactcgaagacgaagaggccgatccgctcggtagctttctggcacatgccgcg
ctcgaagccggtgagggtcaggccgacggccatgaggatgcagtgcagttgatgactctg
cacagcgccaaggggctggagtttccgctggtgttcgtcaccggagtggaggaggggctg
tttccgcacagcatgtcggcggatgaccccgaccggctcgaagaagaacgtcgcctgtgc
tatgtcggcatgacccgcgccatgcagcagctttatctcacccacgccgaaagccgtcgc
ctgcatgggcgcgaggaatatcccatgccctcgcgttttctgcgcgaggtgccggtggcg
ttgattgaggaagtgcgcgcccatggtggccagcggcgctcggggccagtgtttagcagc
gcgcccgctagcggcggttttcaactcggcgaacaggtcatgcaccccaagttcggctcc
ggcgtggtgctaaacagcgagggaaccggcgccagcgcgcgtattcaggtcaacttcgag
gcggttggagccaaatggctggtgctggcctacgcccgtcttgagcgtgtcagcgcataa
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