Thiorhodovibrio frisius: Thiofri_02789
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Entry
Thiofri_02789 CDS
T09561
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tfri
Thiorhodovibrio frisius
Pathway
tfri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thiofri_02789 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfri03019
]
Thiofri_02789 (rne)
03009 Ribosome biogenesis [BR:
tfri03009
]
Thiofri_02789 (rne)
Enzymes [BR:
tfri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Thiofri_02789 (rne)
Messenger RNA biogenesis [BR:
tfri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Thiofri_02789 (rne)
Ribosome biogenesis [BR:
tfri03009
]
Prokaryotic type
rRNA processing factors
Thiofri_02789 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WPL22622
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All DBs
Position
2952244..2955294
Genome browser
AA seq
1016 aa
AA seq
DB search
MKRMLINATQPEELRVAIVDGQQLFNLDIESPGREQKKANIYKGIITRVEPSLEAAFVDY
GSERHGFLPLKEIARAYFDGDAAKPGTKNNIRELIREGQEVVVQIDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGVSRRIEGADRSELREVLSQLDIPEDTGLIVRTAGVGKNTEE
LQWDLDYLKQLWDAIKTSSEERKAPFLIYQESDVIIRSIRDHLRADIGEIVVDDPKMYEK
AQAFVRSVMPHNLKKLRLYDDEVPLFTRYQIESQIESAFQREVRLPSGGALVIDHGEALT
SIDINSARATKGADIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMTPAKNQRDVE
NRLRDALKQDRARVQTSRISRFGLLEMSRQRLRPSLGESSQIVCPRCKGQGTIRGVESLA
LSVLRIVEEEAMKDSTARILAHLPISVATYLLNEKRRAVLTVEDRHQVEILLVPNKSIET
PEYRIERVRGQDVIQSGSDEDVSYQLSEELTTEEILSQVATSRPADEPAVKQLAPSMPAP
HRSEPPTAEHRHAGATAAATHERNENLLKRLWVTFFSGGDSQANASQDSASASAAAAKRE
EPALASEAPPARGRSPRRGSSTSSERQGRVSERSRRTSSTDSQSESGTSATESRASSGPA
SDTASDQPSDGQSQRTERSRSSRRGGRGRGKKSPVNQDNGGNQAEASATPKGGRSSPAEA
WANPDRKGADQPASGEQGPSDKARRDSAAQTPDSGKTDEPAARAEQNSSSDANNQNGDGE
APRPRSSRRRRGGRNRRKPTSPAATNGDSQSTAEATSDTPAAEARQDAPTSGNADSARSQ
PTERQNARRPAREATPAPSEPQREAADPMPAPIPAPASIPAPIPGSISAEPRQPAIKGSE
ASPSSPESMSRPAEAAPLPKTEKLPPSTPPVEKIVSEPKPLGQPGDSPVTPSTPPAPRKQ
EQHIGESGQPRTELPPQPRPPASESGPSTLDRPTDQGSPQRESANSSAGMPPRQDS
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaacgcaactcaaccagaagagttgcgtgtcgccatcgtcgat
ggtcaacaactattcaaccttgatatcgagtcccccggtcgcgagcaaaaaaaggccaat
atttacaaagggattattacccgggtcgagcccagcttggaggcggccttcgtcgactac
ggcagcgagcgccacgggttcctgcctctgaaagaaatcgcacgcgcttactttgacggc
gatgcggccaagcctggcaccaaaaacaacatccgcgagttgatccgcgagggccaggag
gtcgtggtccagatcgacaaggaagaacgcggcaacaagggcgcggccctgaccaccttt
atctcgctcgccggtcgctatctggtactaatgccaaacaatccgcgcgccggtggcgtg
tcgcgccgcattgagggcgcggatcgcagcgagttgcgcgaggtgctcagtcagctcgat
atccccgaggataccgggctgatcgtgcgcaccgctggcgttggcaagaacaccgaggaa
ctccagtgggatctcgactacctcaaacaactctgggacgccatcaagacctcaagtgag
gagcgcaaagcacctttcctgatctatcaggaaagcgatgtgatcatccgctccatccgc
gatcatctgcgcgcggatatcggcgagatcgtggtcgatgatcccaagatgtacgagaag
gcacaggcatttgtgcgctcggtcatgccgcataacctgaagaaactcaggctgtatgac
gacgaagtcccgctgttcacccgctatcagattgaaagccagatcgaatccgccttccag
cgcgaagtgcgcctgccctctggcggcgctctggtgatcgaccacggtgaagccctgacc
tccatcgacatcaactcagcgcgcgccaccaagggcgcggacattgaggaaacggccctc
aacaccaacctggaagccgccgatgaaatcgcccggcaactgcgcttgcgcgatctgggt
ggcttgttcgtcatcgacttcatcgacatgacaccggccaagaaccagcgcgacgtcgaa
aaccgtctgcgcgacgcgctgaaacaagaccgcgcccgggtgcagacctcgcgcatttcg
cgctttggcctgctggagatgtcacgccagcgcctgcgcccgtcgctgggagaatccagc
caaatcgtctgtccgcgctgcaagggccagggcacaattcgcggggttgaatccctcgca
ctctcggtgctgcgcatcgtcgaagaagaggcgatgaaagacagcactgcgcgcatcctg
gcccatctgcccatttcagtcgcaacctacctgctcaatgaaaagcggcgcgcggtgctc
acggtcgaagaccgccaccaggtcgagattctgctggtgccaaacaagagcatcgaaacc
cctgaataccgcatcgagcgcgtccgcggccaggacgtgatccaatccggcagcgatgag
gatgtcagctaccaactcagcgaagagctaaccaccgaggagatcctctcacaggtcgca
accagccgcccagctgacgagccggcggtcaagcaactcgcgccttccatgcccgccccc
caccgcagcgagcccccaacagccgaacaccgccatgcgggcgccactgcggcagccacc
catgagcgcaacgagaatctgctcaagcgtctgtgggtcaccttcttctcgggcggcgac
agccaggcaaacgcgtcgcaggattcggcctccgcttctgcagccgctgccaagcgcgag
gaaccggcgctcgcaagcgaggccccaccggcccgcggccgttcaccgagacgcggatcg
agcactagcagcgagcgccaaggccgcgtgagcgagaggtcgcggcgcacatcttcaaca
gacagccaatccgaatccggcacctccgcgaccgagagccgggccagcagcggcccggcg
agcgacactgccagcgatcagccgagcgacgggcaatcgcaacgcacggagcgctcacgc
tccagtcgccgcggtggacgcggacgcggcaagaaatccccagtcaatcaggacaatggc
ggcaatcaggcggaagccagtgctacgcccaaagggggacggagctcaccagcggaggca
tgggccaacccagaccgcaaaggcgccgaccaaccagccagcggtgaacaaggcccatcc
gacaaagcgcgcagggattccgctgcccaaaccccagactccggcaaaactgacgaaccc
gccgcgcgtgccgagcaaaacagctcctctgacgcgaacaaccagaacggagacggcgaa
gcaccgcgtccgcgctccagccgccggcggcgcggcggtcgtaacagacgcaagccaacc
tccccggcagcgaccaacggggattcccaatccactgccgaggcaacatcagacacaccg
gcagctgaggcccgtcaagacgcgcccacgtcaggcaatgcagattccgcgcgctcacag
cctacagaaagacagaatgcacggcggccggccagggaagcgacgccagcgccgtctgaa
ccccagcgggaagcagccgacccaatgccagcgccaataccagcacccgcttcgatcccg
gcgcctatcccagggtccatatcagcggaacctcggcaaccagctattaaaggatcggaa
gcatcgccatcgtcacctgaatccatgagcaggccagcagaggctgcacctcttcccaaa
acggaaaagctgccaccaagcacgccgcccgttgaaaaaatagtctcggaaccaaaacca
ctcggacagcccggggactcacccgtcacgccatcaacaccaccggcgccaaggaaacaa
gagcagcacatcggggagtcaggccagccaaggaccgagcttccgccccaaccccgcccg
cctgctagtgagtccgggccgagcaccctggatagaccaacagaccagggaagcccccaa
cgtgaatcagcaaactcatccgctgggatgccgccgcgccaagacagttag
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