Thiorhodovibrio frisius: Thiofri_03335
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Entry
Thiofri_03335 CDS
T09561
Symbol
ligT_1
Name
(GenBank) 2'-5'-RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
tfri
Thiorhodovibrio frisius
Brite
KEGG Orthology (KO) [BR:
tfri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tfri03016
]
Thiofri_03335 (ligT_1)
Enzymes [BR:
tfri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Thiofri_03335 (ligT_1)
Transfer RNA biogenesis [BR:
tfri03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Thiofri_03335 (ligT_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
WPL23152
LinkDB
All DBs
Position
complement(3566896..3567459)
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AA seq
187 aa
AA seq
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MRLFVAAPLPGFLIEDLQVLRRSLQSAGLKARWVPPGNMHLTLKFLGEVGSQQLPSLGDT
IRAAVTSIPPITLVAKGIGGFPSLRHCRVLWVGLDGETQRLIALQQRLSGKLQSLGFPRE
RRAYHPHLTLARTRLPLDARHWTAPFADWTSQTMTIDQLALFASTLKPTGAEYRCLHRAT
LTGQIHP
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctgtttgtcgccgcgccactcccaggatttctgatcgaggatttgcaggtcttg
cgacggtccttgcagtccgcggggctcaaagcgcgctgggtgccgcccggcaacatgcat
ttgacgctgaaattcctgggtgaggtcggctcacaacagcttcccagcctgggtgatacc
atcagggcggctgtgaccagcattcctccaatcaccctggtcgccaaggggatcggcggt
ttcccgagtctgcgccactgtcgcgtgctctgggtcggcctggatggcgagacccagcga
ttgatcgctctacagcaacggttaagcgggaaattgcaatctctcgggtttccgcgggag
cgccgggcctatcatccgcatctcacgctggcacggacgcgattaccgctggacgcgcgg
cattggaccgccccatttgccgactggacatcgcaaaccatgacgatcgatcagctcgcg
ctctttgccagcacgctcaagcccacgggggctgagtaccgctgcctgcaccgcgcgacg
ctgaccggccaaatccacccttga
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