Thiorhodovibrio frisius: Thiofri_03354
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Entry
Thiofri_03354 CDS
T09561
Name
(GenBank) Putative ribonuclease Jc
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tfri
Thiorhodovibrio frisius
Pathway
tfri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thiofri_03354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfri03019
]
Thiofri_03354
Messenger RNA biogenesis [BR:
tfri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Thiofri_03354
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
RMMBL
Lactamase_B
Lactamase_B_3
Motif
Other DBs
NCBI-ProteinID:
WPL23171
LinkDB
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Position
complement(3591436..3592740)
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AA seq
434 aa
AA seq
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MNFKIHRGTKEIGGSCVEVWTESTRIIIDFGMPLVNPDRTQFDSRAIKDSSVDELIVKRI
LPDVDGLYDESGTTALILSHAHQDHFGLINYVNANCQTYLGRATQKLIEITNIFTNQDWT
IPNPQHFESGKSFFIGDIEITPYLMDHSAFDAYAFLIKAGGKSLFYSGDFRIHGRKTKAF
DWFSYNAEKNIDYLLLEGTTIGRANKNFPTESEIEEEFVDTFKTSKGINLIYTSGQNIDR
IVSIYRACKRAGKTFAVDFYIANILKELSEFATIPYPSYSFPEIKVFFPYRLSRMISKKG
NEKLLYRFKDYKITKEQIGEEFDKTVMIVRPSMLKDLEFIKGLENGIFIYSMWEGYKKEK
PTKEFIGFLIKRGMTEKSIHTSGHADREALKRMVEVLSPKNLVPIHTFEGDEYKKIFTGT
KVVRISDNETVTIT
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcaaaattcatagaggcacaaaggaaataggaggttcatgtgtagaagtctgg
accgaatcaacacgaataattattgattttggtatgcctttggtgaatccagaccgaacg
cagtttgactcaagagctattaaggattcgtcagtagatgaattgatcgtaaaaagaatt
cttcccgatgtcgatggactttatgatgaatccggaaccactgctttgattttatctcat
gcgcatcaagaccattttggactcataaattatgtgaacgcaaattgccaaacctacctt
ggcagagctactcaaaaactgattgagattaccaatatatttacaaatcaggattggacg
attccaaatccacaacattttgaatcaggaaaatcattttttattggtgatattgaaatt
acaccctatttgatggatcactctgcatttgatgcttatgcgtttctaatcaaagctggt
ggaaagtcacttttttatagcggtgatttcagaatacatggtagaaaaaccaaagccttt
gattggtttagttacaatgcggaaaaaaatattgactatctgcttcttgagggaacaacc
attggtcgggcaaataaaaattttccgaccgagagtgaaatagaagaggaatttgtagat
acttttaaaacaagcaaggggattaatctaatttacacatcaggtcaaaacattgaccgg
atcgtttcaatttatagagcttgcaaaagagcggggaagacttttgctgttgatttttat
attgcaaacattcttaaagagttatcagaatttgcaactatcccgtatccatcatatagc
tttcctgaaatcaaagtatttttcccatatcgactttcccgaatgattagcaaaaaaggg
aatgaaaaattattataccgtttcaaggactataaaatcacgaaagaacaaatcggggaa
gagtttgataaaacggtaatgattgtgcgaccaagcatgttgaaagatctggaatttata
aaaggattagaaaacggcatatttatctattcaatgtgggaaggttataaaaaagaaaaa
ccgacaaaagagttcattggttttctcattaagagaggaatgaccgaaaaatcgattcac
acaagtgggcatgctgatcgagaggcgctgaaaagaatggttgaagtcttaagcccgaag
aatcttgttccaatccatacatttgaaggagatgaatacaaaaaaatattcacaggtaca
aaggtggtgcgaataagcgataatgaaacagtaactattacctaa
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