Thiorhodovibrio frisius: Thiofri_03799
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Entry
Thiofri_03799 CDS
T09561
Symbol
recD_5
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
tfri
Thiorhodovibrio frisius
Pathway
tfri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tfri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Thiofri_03799 (recD_5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfri03400
]
Thiofri_03799 (recD_5)
Enzymes [BR:
tfri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Thiofri_03799 (recD_5)
DNA repair and recombination proteins [BR:
tfri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Thiofri_03799 (recD_5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
SH3_13
OB_YrrC
UvrD_C_2
HHH_5
Viral_helicase1
AAA_11
AAA_22
NAT10_TcmA_helicase
nSTAND3
RsgA_GTPase
AAA_28
PIF1
HHH_2
SLFN-g3_helicase
NTPase_1
AAA_29
AAA_16
HHH
DEAD
AAA
UvrD-helicase
PhoH
MeaB
TrwB_AAD_bind
AAA_18
AAA_23
cobW
AAA_15
Motif
Other DBs
NCBI-ProteinID:
WPL23607
LinkDB
All DBs
Position
complement(4081706..4084012)
Genome browser
AA seq
768 aa
AA seq
DB search
MLEQDQKRLSGMVDRSDTVALTGTVESIGFHNPESGFCVLRVRTRDDWEPAAVVGQALRV
NVGEWVEARGRWVTDKRHGRQFKADELRLKPPGTRAGILRYLSSGLVEGIGPHLAKTLVR
AFGEQVFEVIEQQPERLLELPGIGRKRQQRVLRAWREQHGVRDIVVFLQSHGVGTARAVR
IYKTYGDQAIERVRENPYRLALDISGIGFQTADQLANRLGIARDAPVRIQAGVRHLLWQG
AAAGHCADWRDELTARASAWLGASAVAVDAALANELEAERLIKETVAGRELLFLTHLHRA
ELGVARHIRRLREGRLPWGILGGTLDVDQAWPWVEQRAGLILATSQRAAIAAVLDNKVSI
ITGGPGVGKTTVVNALLLMLRAKRISIRLCAPTGRAAKRLAETTGQEAKTIHRLLEYDPR
RQGFKHDAREPLDTDLVVCDEASMVDVSLMHKLVQALPDHAALLLVGDVDQLPSVGPGAV
LADLIASGAVTTVRLREIFRQGQSSRIVLNAHWVNAGQLPEVPEPQPPDGDFFLIRCEKP
PQIGERLLRTVTERIPQRFGLDPLQDIQVLTPMNRGDLGTRALNASLQRALNGAAEPRVE
RFGWVFAPGDKVIQTVNNYDKEVFNGDIGRILSIDTDARDLRVAFDGRVLIYEFGELDEL
ALAYAISVHKAQGSEYPAVVIPLSNQHFMMLRRNLLYTGMTRGKRLVVLIAQPQALSMAA
EQTGEARLTRLAARLTSKVPDVPEDQFVQFSPTAQQSNPTGESGECVS
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
gtgttggagcaggatcagaaacggctgtccggcatggtcgatcggtctgacacggttgcg
ctgaccggcaccgtcgagagcattggatttcacaatcccgaatcgggcttttgcgtgctg
cgggtacgcacgcgcgatgattgggagccggcggcggtggtggggcaggcgttgcgggtg
aatgtcggcgagtgggtcgaggcgcgcgggcgctgggtaacggacaagcgccatggccgg
cagttcaaagccgacgagctgcggctgaagccgcccggcacgcgcgcgggcattttgcgc
tatctgagttccgggttggtcgaagggatcggaccacacctggccaagaccctggtgcgg
gctttcggcgagcaggtgttcgaggtgatcgagcagcagccggagcgcctgcttgagctg
ccgggtatcgggcgcaagcgccagcagcgggtgctcagggcctggcgcgagcagcatggg
gtgcgcgacattgtggtcttcttgcaatcccatggcgttggcacggcgcgcgcggtgcgc
atttacaagacctatggcgatcaggcaattgaacgggtgcgagagaatccctatcgcctc
gcgctcgacatcagcggcattggctttcagaccgccgatcagctcgccaatcgtttagga
atcgcgcgcgatgcgccggtgcgcattcaggccggggtgcggcatctgttgtggcagggc
gccgcagccggtcattgtgccgactggcgcgatgaattgaccgctcgcgcatcggcctgg
ctgggggccagtgcggtggctgtcgatgcggcactcgctaacgagctggaggccgagcgc
ctgatcaaggagacggttgctgggcgcgagcttttgttcctgacccatctgcaccgcgcc
gagctgggcgtggcccgccatatccggcgcctgcgcgaggggcgcctgccttgggggatt
ctggggggaaccctggatgtcgatcaagcctggccctgggtggagcagcgcgcggggctc
atactggcgacctcacagcgcgcggccattgctgcggtgcttgacaacaaggtcagtatc
atcactggaggccctggtgtcggcaagaccacagtggtcaatgcgctgctgctgatgctg
cgcgccaagcgcatcagcattcgcctgtgcgcgccgaccggccgcgcagccaagcgcctg
gccgagacgaccgggcaggaagccaagaccattcatcgcttgttggagtacgatccgcgg
cgtcagggcttcaagcacgacgcgcgcgagccgttggataccgacctggtcgtctgcgat
gaggcctccatggtggatgtgagtctgatgcacaagctggtgcaggcgctgcctgatcat
gccgcgctcttgctggtgggcgatgtcgatcagctcccgtcagtcggcccgggtgccgtg
ctggccgatctgatcgcctcgggcgccgtcaccacggtgcgcctgcgcgagatttttcgt
cagggccaaagctcgcgcattgtgctgaatgcgcattgggtgaacgcgggacagctgccc
gaggtgcccgagccccagccgccggacggagatttctttctgatccgttgcgaaaagcct
ccgcagatcggcgagcgactgctacgcaccgtgaccgagcgcatcccgcagcgcttcggg
ctcgatccgctgcaagacattcaggtgctcacgccgatgaatcgcggcgatcttggcacc
cgcgcgctcaatgccagcctgcaacgggcgctgaacggcgctgccgagccgcgcgtcgag
cgcttcggctgggtctttgctccgggggacaaggtgatacagacggtcaataactatgat
aaagaggtgttcaacggcgatatcggccggattctcagcatcgacaccgacgcacgcgat
ctgcgcgtggcttttgacggccgggtgctgatctacgaattcggcgaactcgacgaactg
gcgctggcctatgccatcagcgtccataaagcgcaaggctcggagtatcccgccgtggtc
atcccgctatcgaaccagcatttcatgatgctacggcgcaacctgctctacaccggcatg
acgcgtggcaagcgcctagtggttctgatcgcccagccacaggcgctgagcatggccgct
gagcagaccggggaggcgcgcttgacgcgccttgccgcgcgcctcacttctaaagtcccg
gatgtcccagaagaccaatttgtgcaattttcacccactgcccagcaaagcaacccaact
ggcgaatcgggagaatgcgtatcgtga
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