Thiorhodovibrio frisius: Thiofri_04022
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Entry
Thiofri_04022 CDS
T09561
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tfri
Thiorhodovibrio frisius
Pathway
tfri03030
DNA replication
tfri03430
Mismatch repair
tfri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tfri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Thiofri_04022 (dnaE)
03430 Mismatch repair
Thiofri_04022 (dnaE)
03440 Homologous recombination
Thiofri_04022 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tfri03032
]
Thiofri_04022 (dnaE)
03400 DNA repair and recombination proteins [BR:
tfri03400
]
Thiofri_04022 (dnaE)
Enzymes [BR:
tfri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Thiofri_04022 (dnaE)
DNA replication proteins [BR:
tfri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Thiofri_04022 (dnaE)
DNA repair and recombination proteins [BR:
tfri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Thiofri_04022 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
CDC24_OB3
DUF655
Motif
Other DBs
NCBI-ProteinID:
WPL23819
LinkDB
All DBs
Position
complement(4296997..4300608)
Genome browser
AA seq
1203 aa
AA seq
DB search
MEQSFVHLHLHSEFSLVDGLVRPKALVAAAAEAGMPAVAVTDLTNLFCLVRFYKAAMAAG
VKPIVGSEFRVDDPADPAHPHRLVLLVQDLTGYRNLTRLISRAYLERQDTGFPRIDRAWL
TESAEGLIALSAGQHGDVGQALVRGHREEAEQRLSDWLGLFGDRFYLEVMRTGRADEDLY
LEACVDLATAHSVPVVATNDVRFLKTEDFDAHEVRVCIHEGVTLEDPRRPRHYSAEQYLR
TPAEMAELFADLPEALENSLEIAKRCNLELELGKSYLPDSPLPEGRTVNDFIAEASRQGL
DWRLARTFDTQAPDFAERRRVYDERLDIELKVICDMGFPGYFLIVADFIQWAKDQGIPVG
PGRGSGAGSLVAYALKITDLDPIEHDLLFERFLNPERVSMPDFDIDFCMERRDEVIDYVA
RKYGRDAVSQIITFGTMAAKAVVRDVGRVLGQPYGFVDKIAKMVPFELKMTLDKALVESE
ELKAAYAEDEAVTAIIDMARKLEGLARNAGKHAGGVVIAPTKLTDFAPLYCEPGGENLVT
QFDKDDVEQAGLVKFDFLGLRTLTIIDWALKTVNARRAEQGEPPLEIERIDPYDEKAFAL
LKRCETTAVFQLESRGMKELIKKLQPDSFGDITALVALFRPGPLQSGMVDDFIDRKHGRA
AVAYPHPDLEPILKPTYGVILYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKAEEMDKQR
AIFEQGAAERGVDAGVATRIFDLMEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAAFMA
AVLSADMDNTDKVVTLIDECRAMQLSVEPPCINGSEWRFTTAGDARVIYGLGAIKGVGES
AIESILKVRDGRPFADLWDFCRRIDLRRVNRRVVEALIRAGALDKLGKNRATLFNQLPVA
LKLAEQAHASASSGQNDLFGMGGDDADAVPDPQIAADQWPEWDEDERLLGEKETLGLYLT
GHPIDAYESELNAMVSRRIAGLLEGGQSFGFGEEGGARGEPRTVVGLVVAVRVNKTQRGR
MASVTLDDRTGRIEATVFSELYEQTRELLVTDSILVVSGQVVFDQFRDSWSLRASAVRPL
ADARAELADHLHLTLDLAEPARHAQGQTLVDNMIDILQQFRGSGLTVRVHYRRPGATGEL
RLGEDWRIAPSDNLIKRLRQLLGADAVGIVYERELRLAPSLSLVAPGQFEDQPDPEPAEE
LAG
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
gtggagcagtctttcgtccatcttcatctgcattcggagttctccctggttgacggcttg
gtccggccgaaggcgctggtggcggcggcggctgaggcgggcatgccggcggtggcggtg
acggatctgaccaatctgttctgcctggtgcgcttctacaaagcggcgatggcggcgggc
gtcaagccgattgttggcagcgagtttcgcgtcgatgatccggccgatcccgcgcacccg
caccggctggtgctgctggtgcaggacctgaccggttatcgcaacctgacccgcctgatt
tcccgcgcctatctcgaacgccaggacaccggctttccgcgcatcgaccgtgcctggttg
accgagagcgccgaggggctcattgcgctctccgccgggcagcatggcgatgtcggccag
gcgctggtgcgtgggcatcgcgaggaggccgagcagcggctctctgactggctgggcctg
tttggcgacaggttttatctcgaggtcatgcgcaccgggcgcgcggacgaggatctttat
ctcgaggcctgtgtcgatctcgccacggcgcactcggtgcccgtggtggcgaccaacgac
gtgcgttttctaaagaccgaggacttcgatgcccatgaggtgcgggtctgcattcatgag
ggtgtcacgctcgaagacccgcgccgaccgcgccattacagcgccgagcagtatctgcgc
accccggccgagatggcagagctgttcgccgacctgcccgaggcgctggagaattcgctc
gaaatcgccaagcgctgcaatctggagctggaacttggcaaaagttatctgccagactcg
cctttgcccgagggccgcacggtgaatgacttcatcgccgaggcgtcgcgccagggtctt
gactggcggctggcgcgtaccttcgatacccaagcgccggatttcgccgagcgccgtcgg
gtctatgacgagcgcctggatatcgagctcaaagtcatttgtgacatgggctttcccggt
tactttctgattgtggccgactttatccagtgggccaaggatcaggggattccggttggc
ccggggcgtgggtcgggcgcaggttccctggtggcctatgcgctcaagattaccgatctt
gaccccattgaacacgacctgctgttcgagcgctttttgaatcccgagcgcgtgtccatg
cccgacttcgatatcgacttctgcatggagcgccgcgacgaggttatcgactatgtggcc
cgcaagtacggccgcgatgccgtgtcgcaaatcatcaccttcggcaccatggcggccaag
gcggtggtgcgcgatgtcgggcgtgtgctgggccaaccctatggctttgtcgacaagatt
gccaaaatggtgccctttgagctcaagatgacgctcgacaaggcgctggtcgagagcgag
gagctcaaagcggcctatgccgaagacgaagccgttaccgccatcatcgatatggcgcgc
aagcttgagggcttggcgcgcaatgccggcaagcatgcgggtggcgtggtcatcgcaccg
accaagctgacggatttcgcaccgctctactgcgagccgggcggcgagaatctggtcacc
cagttcgacaaggacgatgtcgaacaggccggcctggtgaagttcgacttcctcggtctg
cgcactctcaccatcatcgactgggcgctcaagacggtgaacgcccgacgcgccgagcag
ggcgagccgccgctcgagatcgaacgcatcgatccttatgatgagaaagccttcgcgctg
ctcaagcgttgcgagaccacggcggtgttccagcttgagtcgcgcggcatgaaggagctg
ataaaaaagctccagcccgacagctttggcgacattaccgccctggtggccctgtttcgc
cccggtccgctgcaatcgggcatggtggatgacttcatcgaccgcaagcatggtcgcgcc
gcagtggcctatccgcacccggatctcgaacccatcctcaagcccacctatggtgtcatt
ctgtatcaggagcaggtgatgcagatcgcccaggtcctcgccggctactcgcttggcggc
gccgatctgctgcgccgtgccatgggcaagaagaaggccgaggagatggataagcagcgc
gctattttcgaacaaggcgcagccgagcgcggcgtggatgccggggtggcaacccgcatt
ttcgatctgatggaaaaattcgccggctatggcttcaataaaagccattcggcggcttat
gcgctggtgtcctaccagaccctgtggctgaagacgcattatcccgccgctttcatggcc
gccgtgctctcagccgatatggacaacaccgacaaggtggtgaccctgatcgacgaatgc
cgggcgatgcagcttagtgttgagccgccttgcatcaacggctccgagtggcgcttcacc
actgcaggtgatgcgcgcgtcatctacggcctgggcgccatcaaaggcgtgggcgagtcc
gctatcgagagcatccttaaggtgcgcgatggccggccctttgctgatttgtgggatttt
tgccgccgcatcgatctgcgccgggtgaatcgccgggtggtcgaggcgctgattcgtgcc
ggcgcgctcgacaagctcggcaagaaccgtgcaaccctgtttaaccagctgccggtggcg
ctcaagctggccgagcaggcgcatgccagcgctagcagcggtcaaaatgatctcttcggc
atggggggtgacgacgccgacgccgttcccgacccacagatcgccgccgaccaatggccg
gagtgggacgaggacgagcgcctgctcggcgagaaggaaaccttgggcctgtatctcacc
ggtcatcctatcgatgcctatgagtcggaattgaacgccatggtctcgcgccgcatcgct
ggcctgctcgagggcggccagagctttggctttggtgaggaaggcggtgcgcgcggcgag
ccgcgtaccgtggtcggcctggtggtggcggtgcgagtcaacaagactcagcgcgggcgc
atggctagcgtgaccctggatgatcgtaccgggcgcatcgaagcgacggtgttctccgag
ctttacgaacaaacgcgcgagctattggtgaccgacagtatcctggtggtctccgggcag
gtggtgttcgatcagttccgcgatagttggtctctgcgcgccagtgccgtgcgcccactg
gcagatgcgcgtgccgagttggccgatcatctgcatctgacgctcgacctggccgagccc
gcgcggcatgcgcagggccagacgctggtcgataacatgatcgacattctccagcaattt
cgcggcagtggtcttactgtgcgcgtccattaccgacgcccgggtgcaaccggcgagctg
cgcctgggcgaggactggcggattgcccccagcgacaacctgattaaacgcctgcgccag
ttgctgggggccgacgcggtgggcatcgtctatgagcgcgaactgcgtctggcgccatcg
ctgagcctggtcgcgccggggcagtttgaggatcagccagaccctgaacccgctgaggag
cttgctggctga
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